Variant report

Variant	rs13064076
Chromosome Location	chr3:53083391-53083392
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12486028	1.00[AMR][1000 genomes]
rs12633559	1.00[AMR][1000 genomes]
rs1991567	1.00[AMR][1000 genomes]
rs2564925	1.00[AMR][1000 genomes]
rs2564927	1.00[AMR][1000 genomes]
rs2564946	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2581781	1.00[AMR][1000 genomes]
rs2581814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710315	1.00[AMR][1000 genomes]
rs2710327	1.00[AMR][1000 genomes]
rs4234640	1.00[AMR][1000 genomes]
rs55654539	1.00[AMR][1000 genomes]
rs58561805	1.00[AMR][1000 genomes]
rs59234300	1.00[AMR][1000 genomes]
rs72967414	1.00[AMR][1000 genomes]
rs7629350	1.00[AMR][1000 genomes]
rs9869545	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818974	chr3:52966316-53096394	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv876800	chr3:53038786-53113762	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1820544	chr3:53046712-53096394	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv822094	chr3:53059674-53096460	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv590347	chr3:53079048-53088815	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53080600-53084000	Weak transcription	HepG2	liver
2	chr3:53080800-53084400	Weak transcription	HSMMtube	muscle
3	chr3:53081000-53085400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:53081200-53085200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:53081200-53085200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:53081200-53085400	Weak transcription	Brain Anterior Caudate	brain
7	chr3:53081200-53085400	Weak transcription	Pancreas	Pancrea
8	chr3:53081800-53086600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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