The 2.0 version of rSNPBase

Variant report

Variant rs2564927
Chromosome Location chr3:53115440-53115441
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53107200-53118000 Weak transcription Fetal Brain Female brain
2 chr3:53107200-53118000 Weak transcription HSMMtube muscle
3 chr3:53107400-53117600 Weak transcription Brain Angular Gyrus brain
4 chr3:53107400-53117600 Weak transcription Brain Substantia Nigra brain
5 chr3:53107400-53123200 Weak transcription Lung lung
6 chr3:53107600-53117600 Weak transcription Brain Hippocampus Middle brain
7 chr3:53107600-53117600 Weak transcription Left Ventricle heart
8 chr3:53107600-53117800 Weak transcription Placenta Amnion Placenta Amnion
9 chr3:53107600-53118000 Weak transcription Thymus Thymus
10 chr3:53107600-53123200 Weak transcription Right Ventricle heart
11 chr3:53107600-53123400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr3:53107600-53133600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr3:53107800-53117600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
14 chr3:53107800-53117600 Weak transcription Esophagus oesophagus
15 chr3:53107800-53117600 Weak transcription Pancreas Pancrea
16 chr3:53107800-53117800 Weak transcription Primary T helper cells PMA-I stimulated --
17 chr3:53107800-53117800 Weak transcription Duodenum Mucosa Duodenum
18 chr3:53107800-53118200 Weak transcription Primary T regulatory cells fromperipheralblood blood
19 chr3:53107800-53118200 Weak transcription Stomach Mucosa stomach
20 chr3:53107800-53119400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
21 chr3:53107800-53120800 Weak transcription Primary hematopoietic stem cells short term culture blood
22 chr3:53107800-53120800 Weak transcription Gastric stomach
23 chr3:53107800-53121400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
24 chr3:53107800-53121600 Weak transcription Primary B cells from cord blood blood
25 chr3:53107800-53122000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr3:53107800-53122200 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr3:53107800-53123000 Weak transcription Placenta Placenta
28 chr3:53107800-53123200 Weak transcription Primary hematopoietic stem cells blood
29 chr3:53107800-53123200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr3:53107800-53123600 Weak transcription Brain Germinal Matrix brain
31 chr3:53107800-53123800 Weak transcription Primary T killer memory cells from peripheral blood blood
32 chr3:53107800-53126000 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr3:53107800-53134000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
34 chr3:53107800-53151400 Weak transcription iPS-15b Cell Line embryonic stem cell
35 chr3:53108000-53115600 Weak transcription NHEK skin
36 chr3:53108000-53117600 Weak transcription Fetal Muscle Trunk muscle
37 chr3:53108000-53117800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr3:53108000-53118000 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr3:53108000-53118000 Weak transcription Monocytes-CD14+_RO01746 blood
40 chr3:53108000-53118400 Weak transcription Primary monocytes fromperipheralblood blood
41 chr3:53108000-53118400 Weak transcription Spleen Spleen
42 chr3:53108000-53119000 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr3:53108000-53121200 Weak transcription Primary B cells from peripheral blood blood
44 chr3:53108000-53123200 Weak transcription Primary T cells fromperipheralblood blood
45 chr3:53108000-53123200 Weak transcription Colonic Mucosa Colon
46 chr3:53108000-53123200 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr3:53108000-53123400 Weak transcription Adipose Nuclei Adipose
48 chr3:53108000-53123800 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr3:53108200-53118200 Weak transcription Fetal Intestine Large intestine
50 chr3:53108200-53123400 Weak transcription GM12878-XiMat blood

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Last update: Aug 31, 2015