The 2.0 version of rSNPBase

Variant report

Variant rs2535622
Chromosome Location chr3:52863387-52863388
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:75 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52847600-52865000 Weak transcription Psoas Muscle Psoas
2 chr3:52848400-52865800 Weak transcription Ovary ovary
3 chr3:52850200-52868400 Weak transcription Colonic Mucosa Colon
4 chr3:52850600-52864200 Strong transcription Stomach Smooth Muscle stomach
5 chr3:52850800-52865400 Strong transcription Fetal Stomach stomach
6 chr3:52851600-52863400 Strong transcription Breast Myoepithelial Primary Cells Breast
7 chr3:52852200-52869200 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr3:52852800-52869200 Weak transcription Primary B cells from cord blood blood
9 chr3:52853000-52868000 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr3:52854200-52874200 Weak transcription H9 Cell Line embryonic stem cell
11 chr3:52854800-52869200 Weak transcription Primary T helper cells fromperipheralblood blood
12 chr3:52854800-52888400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr3:52855200-52865400 Weak transcription Brain Substantia Nigra brain
14 chr3:52855600-52865400 Weak transcription Colon Smooth Muscle Colon
15 chr3:52856000-52865400 Weak transcription Rectal Smooth Muscle rectum
16 chr3:52856000-52875000 Weak transcription Fetal Intestine Large intestine
17 chr3:52856200-52865600 Weak transcription Left Ventricle heart
18 chr3:52856400-52868200 Weak transcription Fetal Lung lung
19 chr3:52856600-52864400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr3:52856800-52863400 Strong transcription Fetal Thymus thymus
21 chr3:52857000-52868600 Weak transcription Primary B cells from peripheral blood blood
22 chr3:52857800-52865400 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr3:52858000-52867800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr3:52858000-52868400 Weak transcription Brain Germinal Matrix brain
25 chr3:52858200-52865400 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr3:52858400-52865400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr3:52858400-52865400 Weak transcription Brain Angular Gyrus brain
28 chr3:52858400-52866800 Weak transcription Fetal Brain Female brain
29 chr3:52858400-52867200 Weak transcription Primary T cells fromperipheralblood blood
30 chr3:52858400-52867600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
31 chr3:52858600-52864600 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr3:52858600-52864800 Weak transcription Right Ventricle heart
33 chr3:52858600-52865600 Weak transcription Brain Hippocampus Middle brain
34 chr3:52858600-52866800 Weak transcription Monocytes-CD14+_RO01746 blood
35 chr3:52858600-52867000 Weak transcription Primary monocytes fromperipheralblood blood
36 chr3:52858800-52864000 Weak transcription Aorta Aorta
37 chr3:52858800-52864400 Weak transcription Placenta Placenta
38 chr3:52858800-52866800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
39 chr3:52858800-52868800 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr3:52858800-52868800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
41 chr3:52858800-52869200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
42 chr3:52859000-52865200 Weak transcription Brain Cingulate Gyrus brain
43 chr3:52859200-52865400 Weak transcription Brain Anterior Caudate brain
44 chr3:52859400-52869000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
45 chr3:52860200-52869000 Weak transcription Fetal Intestine Small intestine
46 chr3:52860400-52865400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr3:52861000-52863600 Weak transcription Thymus Thymus
48 chr3:52861000-52865000 Weak transcription Brain Inferior Temporal Lobe brain
49 chr3:52861200-52865600 Weak transcription Esophagus oesophagus
50 chr3:52861200-52866400 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015