Variant report

Variant rs2336158
Chromosome Location chr3:52879497-52879498
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52854800-52888400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr3:52862000-52882600 Weak transcription Placenta Amnion Placenta Amnion
3 chr3:52866000-52884800 Weak transcription HMEC breast
4 chr3:52866200-52885200 Weak transcription NHEK skin
5 chr3:52866800-52879600 Genic enhancers Fetal Thymus thymus
6 chr3:52867000-52881600 Weak transcription iPS-15b Cell Line embryonic stem cell
7 chr3:52867000-52881800 Weak transcription HUES64 Cell Line embryonic stem cell
8 chr3:52868000-52883200 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr3:52869000-52881800 Weak transcription Fetal Kidney kidney
10 chr3:52869600-52879600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr3:52869600-52881800 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr3:52869800-52882000 Weak transcription H1 Cell Line embryonic stem cell
13 chr3:52869800-52884000 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr3:52870000-52901000 Weak transcription Fetal Brain Male brain
15 chr3:52871200-52879800 Strong transcription Breast Myoepithelial Primary Cells Breast
16 chr3:52873400-52879600 Weak transcription GM12878-XiMat blood
17 chr3:52873400-52891600 Strong transcription Primary T cells from cord blood blood
18 chr3:52873400-52892000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
19 chr3:52873600-52881800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr3:52873600-52882600 Weak transcription Primary T killer naive cells fromperipheralblood blood
21 chr3:52873600-52889000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr3:52873800-52882200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
23 chr3:52873800-52889000 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr3:52873800-52891400 Strong transcription Primary T regulatory cells fromperipheralblood blood
25 chr3:52874200-52879600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
26 chr3:52874200-52883800 Enhancers Psoas Muscle Psoas
27 chr3:52874400-52879800 Genic enhancers Fetal Muscle Trunk muscle
28 chr3:52874800-52880200 Enhancers Right Atrium heart
29 chr3:52875600-52880200 Enhancers HSMMtube muscle
30 chr3:52875800-52882600 Weak transcription NH-A brain
31 chr3:52875800-52885800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr3:52876000-52885800 Weak transcription Primary T helper naive cells from peripheral blood blood
33 chr3:52876400-52879600 Genic enhancers Primary monocytes fromperipheralblood blood
34 chr3:52876400-52880000 Genic enhancers Monocytes-CD14+_RO01746 blood
35 chr3:52876600-52880000 Genic enhancers Fetal Stomach stomach
36 chr3:52876600-52880400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr3:52876600-52881200 Weak transcription Fetal Intestine Large intestine
38 chr3:52876800-52879800 Enhancers Placenta Placenta
39 chr3:52876800-52880400 Enhancers Duodenum Smooth Muscle Duodenum
40 chr3:52876800-52881400 Weak transcription HUES6 Cell Line embryonic stem cell
41 chr3:52876800-52881600 Weak transcription H9 Cell Line embryonic stem cell
42 chr3:52876800-52881600 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr3:52876800-52881600 Weak transcription Dnd41 blood
44 chr3:52876800-52882000 Weak transcription iPS-20b Cell Line embryonic stem cell
45 chr3:52876800-52883600 Weak transcription Aorta Aorta
46 chr3:52877000-52881200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr3:52877000-52881200 Weak transcription Ovary ovary
48 chr3:52877000-52881800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr3:52877000-52882200 Weak transcription HUES48 Cell Line embryonic stem cell
50 chr3:52877000-52883200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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