The 2.0 version of rSNPBase

Variant report

Variant rs2710341
Chromosome Location chr3:52962546-52962547
allele A/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52931800-52965400 Weak transcription Spleen Spleen
2 chr3:52932000-52964000 Weak transcription Placenta Amnion Placenta Amnion
3 chr3:52932000-52970000 Weak transcription H9 Cell Line embryonic stem cell
4 chr3:52932000-52978000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr3:52932200-52963000 Weak transcription Stomach Mucosa stomach
6 chr3:52932200-52966400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr3:52932200-52967800 Weak transcription HSMM muscle
8 chr3:52932200-52968600 Weak transcription Osteobl bone
9 chr3:52932200-52968800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr3:52932200-52968800 Weak transcription Fetal Brain Male brain
11 chr3:52932400-52968600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
12 chr3:52932400-52968600 Weak transcription NHDF-Ad bronchial
13 chr3:52932400-52968800 Weak transcription NHEK skin
14 chr3:52935600-52968600 Strong transcription Dnd41 blood
15 chr3:52941800-52980200 Weak transcription Psoas Muscle Psoas
16 chr3:52943600-52964000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr3:52947400-52968000 Weak transcription Fetal Lung lung
18 chr3:52947600-52963000 Weak transcription Fetal Heart heart
19 chr3:52949000-52968800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr3:52949200-52962800 Weak transcription K562 blood
21 chr3:52950000-52966600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
22 chr3:52951200-52966400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr3:52951400-52964400 Strong transcription Fetal Intestine Large intestine
24 chr3:52952000-52968600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr3:52952800-52965600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr3:52953000-52963000 Strong transcription Rectal Mucosa Donor 29 rectum
27 chr3:52953800-52964600 Weak transcription Fetal Kidney kidney
28 chr3:52954000-52964000 Weak transcription Rectal Smooth Muscle rectum
29 chr3:52954000-53012200 Weak transcription Esophagus oesophagus
30 chr3:52954200-53012200 Weak transcription Pancreas Pancrea
31 chr3:52954400-52963600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr3:52954400-52964800 Weak transcription Ovary ovary
33 chr3:52954400-52968600 Weak transcription iPS-18 Cell Line embryonic stem cell
34 chr3:52954600-52967000 Weak transcription H1 Cell Line embryonic stem cell
35 chr3:52954800-52968400 Weak transcription Brain Substantia Nigra brain
36 chr3:52954800-52976800 Weak transcription Brain Germinal Matrix brain
37 chr3:52955000-52964200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr3:52955200-52968600 Weak transcription HUES64 Cell Line embryonic stem cell
39 chr3:52955200-52968600 Weak transcription Colon Smooth Muscle Colon
40 chr3:52955200-52986400 Weak transcription Primary T killer naive cells fromperipheralblood blood
41 chr3:52955400-52963800 Weak transcription Brain Anterior Caudate brain
42 chr3:52955800-52968800 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr3:52956000-52968600 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr3:52956000-52973800 Weak transcription iPS-20b Cell Line embryonic stem cell
45 chr3:52956200-52963800 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr3:52956200-52968400 Weak transcription Brain Hippocampus Middle brain
47 chr3:52956400-52963000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
48 chr3:52956400-52967600 Weak transcription Fetal Brain Female brain
49 chr3:52956400-52986400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
50 chr3:52956800-52964200 Strong transcription Fetal Stomach stomach

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Last update: Aug 31, 2015