Variant report

Variant	rs9810065
Chromosome Location	chr3:136823119-136823120
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13098923	0.85[ASN][1000 genomes]
rs1484790	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1484792	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4678292	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6768820	0.82[ASN][1000 genomes]
rs6773448	0.85[ASN][1000 genomes]
rs6795587	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6806914	0.85[ASN][1000 genomes]
rs6808049	0.85[ASN][1000 genomes]
rs6808051	0.85[ASN][1000 genomes]
rs7627723	0.85[ASN][1000 genomes]
rs9289525	0.85[ASN][1000 genomes]
rs9819250	0.85[ASN][1000 genomes]
rs9822931	0.85[ASN][1000 genomes]
rs9826507	0.85[ASN][1000 genomes]
rs9833382	0.93[ASN][1000 genomes]
rs9843219	0.85[ASN][1000 genomes]
rs9855204	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9870582	0.84[ASN][1000 genomes]
rs9874836	0.85[ASN][1000 genomes]
rs9881036	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9882135	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv829733	chr3:136820486-136946215	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136806000-136827800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:136816800-136823600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:136817000-136827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:136822200-136823600	Enhancers	Fetal Brain Male	brain
5	chr3:136822200-136824400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:136822200-136824600	Enhancers	Fetal Brain Female	brain
7	chr3:136822600-136824400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:136822600-136825000	Enhancers	Fetal Muscle Leg	muscle
9	chr3:136822600-136825800	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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