Variant report

Variant	rs9833382
Chromosome Location	chr3:136868229-136868230
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1484790	0.99[ASN][1000 genomes]
rs1484792	0.99[ASN][1000 genomes]
rs4678292	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6768820	0.89[ASN][1000 genomes]
rs6795587	0.87[ASN][1000 genomes]
rs9810065	0.93[ASN][1000 genomes]
rs9855204	0.98[ASN][1000 genomes]
rs9881036	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv829733	chr3:136820486-136946215	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136867200-136869400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:136867400-136868400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr3:136867600-136868400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:136867800-136869600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:136868000-136870000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:136868000-136879400	Weak transcription	Esophagus	oesophagus
7	chr3:136868200-136869400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:136868200-136869400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:136868200-136869600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:136868200-136869600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:136868200-136872000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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