Variant report

Variant	rs9810187
Chromosome Location	chr3:141775028-141775029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141767270..141770576-chr3:141773885..141776587,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1705624	0.85[ASN][1000 genomes]
rs1912719	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs347679	0.81[AMR][1000 genomes]
rs347687	0.85[AMR][1000 genomes]
rs9865413	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002446	chr3:141719169-142070290	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2757892	chr3:141728870-142129836	Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv2759182	chr3:141728870-142129836	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv877553	chr3:141732321-141786073	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv877554	chr3:141735532-141781890	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv877555	chr3:141740076-141791408	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv2757013	chr3:141756541-142094631	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141747600-141780400	Weak transcription	Left Ventricle	heart
2	chr3:141758400-141777400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:141758800-141775800	Weak transcription	Ovary	ovary
4	chr3:141760600-141800800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:141761000-141781600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr3:141761000-141807800	Weak transcription	Fetal Lung	lung
7	chr3:141761600-141775600	Weak transcription	NHEK	skin
8	chr3:141761800-141819600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:141762600-141775800	Weak transcription	Lung	lung
10	chr3:141762800-141782800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:141763000-141778200	Weak transcription	Fetal Intestine Large	intestine
12	chr3:141763000-141820000	Weak transcription	Pancreas	Pancrea
13	chr3:141763000-141824200	Weak transcription	Aorta	Aorta
14	chr3:141764000-141825600	Weak transcription	Primary T cells from cord blood	blood
15	chr3:141765000-141818800	Weak transcription	Primary B cells from cord blood	blood
16	chr3:141767000-141798000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:141767600-141807200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:141769600-141790200	Strong transcription	Fetal Thymus	thymus
19	chr3:141770200-141775600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:141770400-141795800	Weak transcription	Fetal Stomach	stomach
21	chr3:141770800-141775600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:141771000-141775600	Weak transcription	Placenta	Placenta
23	chr3:141771000-141789200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:141771200-141775400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:141771800-141780200	Weak transcription	Thymus	Thymus
26	chr3:141772400-141775600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:141772400-141780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:141772400-141780200	Weak transcription	Fetal Intestine Small	intestine
29	chr3:141772600-141777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:141772800-141775600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:141773600-141775600	Weak transcription	Dnd41	blood
32	chr3:141773800-141780200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:141774400-141783000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:141774400-141798800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:141774600-141775600	Weak transcription	K562	blood
36	chr3:141775000-141775800	Enhancers	Fetal Muscle Leg	muscle

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