Variant report

Variant	rs9810837
Chromosome Location	chr3:82035767-82035768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11921941	0.89[EUR][1000 genomes]
rs11925876	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2178314	0.92[EUR][1000 genomes]
rs4434167	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7610957	0.92[EUR][1000 genomes]
rs7616888	0.94[EUR][1000 genomes]
rs9309886	0.93[EUR][1000 genomes]
rs9813907	0.91[EUR][1000 genomes]
rs9841279	0.94[EUR][1000 genomes]
rs9841488	0.92[EUR][1000 genomes]
rs9875387	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82031000-82038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:82035000-82037400	Active TSS	HepG2	liver
3	chr3:82035200-82035800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:82035400-82036000	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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