Variant report

Variant	rs9875387
Chromosome Location	chr3:82050284-82050285
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11127758	0.84[AFR][1000 genomes]
rs11921941	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11922298	0.84[AFR][1000 genomes]
rs11925876	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13321907	0.86[AFR][1000 genomes]
rs2178314	0.95[EUR][1000 genomes]
rs4434167	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6769852	0.86[AFR][1000 genomes]
rs7610957	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7616888	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9309885	0.83[AFR][1000 genomes]
rs9309886	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9810837	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9812960	0.82[YRI][hapmap]
rs9813907	0.94[EUR][1000 genomes]
rs9841279	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9841488	0.95[EUR][1000 genomes]
rs9867563	0.82[YRI][hapmap]
rs9872972	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82046200-82053800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:82047200-82052800	Enhancers	Brain Germinal Matrix	brain
3	chr3:82047600-82050600	Weak transcription	HSMMtube	muscle
4	chr3:82048200-82051600	Weak transcription	Fetal Heart	heart
5	chr3:82048400-82050400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:82048400-82050800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:82049400-82055000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:82049600-82050400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:82049600-82051800	Enhancers	Fetal Muscle Leg	muscle
10	chr3:82049600-82052800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:82049600-82055000	Enhancers	Fetal Brain Male	brain
12	chr3:82049800-82050600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:82049800-82051000	Enhancers	Right Ventricle	heart
14	chr3:82049800-82055000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:82050000-82050400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr3:82050000-82053400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:82050000-82054600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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