Variant report

Variant	rs11127758
Chromosome Location	chr3:82044804-82044805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:82044423..82045130-chr3:82182277..82182777,2	MCF-7	breast:

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs11127754	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11127757	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11916839	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11917347	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918223	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11919912	0.86[EUR][1000 genomes]
rs11922298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11925876	0.85[AFR][1000 genomes]
rs11929553	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630225	0.86[EUR][1000 genomes]
rs13059531	0.86[EUR][1000 genomes]
rs13088518	0.89[EUR][1000 genomes]
rs13088543	0.82[EUR][1000 genomes]
rs13314987	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13321907	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534668	0.90[EUR][1000 genomes]
rs17019551	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1919559	0.90[EUR][1000 genomes]
rs2068210	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068211	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141489	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2178315	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2178316	0.88[EUR][1000 genomes]
rs2316703	0.93[ASN][1000 genomes]
rs28455989	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28475537	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28536106	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28561953	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28564625	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28683026	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4521254	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60509851	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60782263	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62265731	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62265755	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62265756	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62265757	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62268572	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6419747	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548789	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548790	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548793	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66870475	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763269	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767358	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6769852	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6773980	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774064	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774157	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776655	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778814	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6781140	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6805116	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7611244	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7611492	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612452	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614689	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7615354	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7619146	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7622355	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7623648	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7634781	0.84[EUR][1000 genomes]
rs7635092	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9309885	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9811625	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9812010	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815442	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9816690	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817048	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9819290	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9820525	0.90[EUR][1000 genomes]
rs9820687	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9821368	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9821506	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9821800	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9822483	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9831887	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9832377	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9834983	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9836048	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838997	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840948	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843444	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9845227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848134	0.86[EUR][1000 genomes]
rs9851363	0.86[EUR][1000 genomes]
rs9853043	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9857313	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9857742	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9858684	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859766	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9863450	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9866029	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866312	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9866476	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9867563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868182	0.84[EUR][1000 genomes]
rs9869419	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9869718	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9872972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875359	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9875387	0.84[AFR][1000 genomes]
rs9876062	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876340	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9878115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878768	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882486	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882687	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883163	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9883264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82039400-82046000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:82044200-82049800	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links