Variant report

Variant	rs6763269
Chromosome Location	chr3:82030476-82030477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SRF	chr3:82029855-82030572	HCT-116	colon:	n/a	chr3:82030209-82030226
2	JUND	chr3:82029847-82030598	HCT-116	colon:	n/a	chr3:82030158-82030167 chr3:82030159-82030168 chr3:82030492-82030499 chr3:82030159-82030167 chr3:82030160-82030167 chr3:82030157-82030168 chr3:82030157-82030169
3	SP1	chr3:82029797-82030566	HCT-116	colon:	n/a	n/a
4	NFIC	chr3:82030081-82030735	ECC-1	luminal epithelium:	n/a	chr3:82030425-82030442 chr3:82030426-82030442
5	NFIC	chr3:82029985-82030618	GM12878	blood:	n/a	chr3:82030425-82030442 chr3:82030426-82030442
6	SRF	chr3:82029863-82030569	HCT-116	colon:	n/a	chr3:82030209-82030226
7	TCF7L2	chr3:82029785-82030639	HCT-116	colon:	n/a	chr3:82030011-82030027 chr3:82030012-82030026 chr3:82030014-82030023 chr3:82030011-82030027 chr3:82030158-82030167
8	JUND	chr3:82029801-82030523	SK-N-SH	brain:	n/a	chr3:82030158-82030167 chr3:82030159-82030168 chr3:82030492-82030499 chr3:82030159-82030167 chr3:82030160-82030167 chr3:82030157-82030168 chr3:82030157-82030169
9	FOS	chr3:82029906-82030517	MCF10A-Er-Src	breast:	n/a	chr3:82030158-82030167 chr3:82030159-82030168 chr3:82030492-82030499 chr3:82030159-82030167 chr3:82030160-82030167 chr3:82030157-82030169
10	STAT3	chr3:82030137-82030570	MCF10A-Er-Src	breast:	n/a	chr3:82030159-82030168 chr3:82030158-82030167
11	FOS	chr3:82029992-82030501	MCF10A-Er-Src	breast:	n/a	chr3:82030158-82030167 chr3:82030159-82030168 chr3:82030492-82030499 chr3:82030159-82030167 chr3:82030160-82030167 chr3:82030157-82030169
12	NFIC	chr3:82030240-82030702	ECC-1	luminal epithelium:	n/a	chr3:82030425-82030442 chr3:82030426-82030442
13	FOS	chr3:82029971-82030625	MCF10A-Er-Src	breast:	n/a	chr3:82030158-82030167 chr3:82030159-82030168 chr3:82030492-82030499 chr3:82030159-82030167 chr3:82030160-82030167 chr3:82030157-82030169
14	FOSL1	chr3:82029766-82030693	HCT-116	colon:	n/a	chr3:82030158-82030167 chr3:82030159-82030168 chr3:82030492-82030499 chr3:82030159-82030167 chr3:82030160-82030167 chr3:82030157-82030169

Variant related genes	Relation type
ENSG00000239440	TF binding region

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs11127754	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11127757	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11127758	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11916839	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11917347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918223	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11919912	0.83[EUR][1000 genomes]
rs11922298	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11929553	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12630225	0.84[EUR][1000 genomes]
rs13059531	0.84[EUR][1000 genomes]
rs13088518	0.87[EUR][1000 genomes]
rs13314987	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13321907	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1534668	0.88[EUR][1000 genomes]
rs17019551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1919559	0.88[EUR][1000 genomes]
rs2068210	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068211	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141489	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2178315	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2178316	0.90[EUR][1000 genomes]
rs2316703	0.93[ASN][1000 genomes]
rs28455989	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28475537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28536106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28561953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28564625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28683026	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4521254	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60509851	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60782263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62265731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62265755	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62265756	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62265757	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62268572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6419747	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548793	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66870475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6767358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6769852	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6773980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6774157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778814	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6781140	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6805116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7611244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7611492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612452	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614689	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7615354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7619146	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7622355	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7623648	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7634781	0.86[EUR][1000 genomes]
rs7635092	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9309885	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9811625	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9812010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812960	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814587	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9815442	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9816690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817048	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9819290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9820525	0.92[EUR][1000 genomes]
rs9820687	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9821368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9821506	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9821800	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9822483	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9831887	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9832377	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9834983	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9836048	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838997	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843444	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9845227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848134	0.84[EUR][1000 genomes]
rs9853043	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9857313	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9857742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9858684	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859766	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9863450	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9866029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9866476	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9867563	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868182	0.86[EUR][1000 genomes]
rs9869419	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9869718	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9872972	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9873073	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9876062	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9876340	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9878115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882486	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882687	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883163	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752870	chr3:82014410-82050310	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82029800-82030800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:82029800-82031000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:82029800-82031600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:82030000-82030600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:82030200-82030600	Enhancers	NHEK	skin

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