Variant report

Variant	rs1919559
Chromosome Location	chr3:82204602-82204603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 140 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs11127754	0.88[EUR][1000 genomes]
rs11127757	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11127758	0.90[EUR][1000 genomes]
rs11916839	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11917041	0.98[ASN][1000 genomes]
rs11917347	0.88[EUR][1000 genomes]
rs11918223	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11919912	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11922298	0.90[EUR][1000 genomes]
rs11929553	0.88[EUR][1000 genomes]
rs12630225	0.95[EUR][1000 genomes]
rs13059531	0.95[EUR][1000 genomes]
rs13088518	0.89[EUR][1000 genomes]
rs13088543	0.82[EUR][1000 genomes]
rs13314987	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13321907	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13434355	0.98[ASN][1000 genomes]
rs1534668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17019551	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1919565	0.98[ASN][1000 genomes]
rs1919566	0.98[ASN][1000 genomes]
rs2068210	0.86[EUR][1000 genomes]
rs2068211	0.88[EUR][1000 genomes]
rs2141489	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2178315	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2178316	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2316703	0.83[ASN][1000 genomes]
rs28393435	0.98[ASN][1000 genomes]
rs28455989	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28475537	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28536106	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28561953	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28564625	0.88[EUR][1000 genomes]
rs28683026	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4521254	0.90[EUR][1000 genomes]
rs60509851	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60782263	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61543943	0.94[ASN][1000 genomes]
rs61679258	0.98[ASN][1000 genomes]
rs62265731	0.88[EUR][1000 genomes]
rs62265755	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62265756	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62265757	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62268572	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6419747	0.86[EUR][1000 genomes]
rs6548789	0.86[EUR][1000 genomes]
rs6548790	0.88[EUR][1000 genomes]
rs6548793	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6548794	0.98[ASN][1000 genomes]
rs66870475	0.88[EUR][1000 genomes]
rs6763269	0.88[EUR][1000 genomes]
rs6767358	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6769852	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6773980	0.88[EUR][1000 genomes]
rs6774064	0.88[EUR][1000 genomes]
rs6774157	0.88[EUR][1000 genomes]
rs6776655	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs6778325	0.98[ASN][1000 genomes]
rs6778814	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6781140	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6792426	0.98[ASN][1000 genomes]
rs6793519	0.98[ASN][1000 genomes]
rs6804280	0.87[ASN][1000 genomes]
rs6805116	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7611244	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7611492	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7612452	0.88[EUR][1000 genomes]
rs7614689	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7615354	0.86[EUR][1000 genomes]
rs7619146	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7622355	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7623648	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7634781	0.93[EUR][1000 genomes]
rs7635092	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7639020	0.98[ASN][1000 genomes]
rs7639102	0.94[ASN][1000 genomes]
rs7639908	0.98[ASN][1000 genomes]
rs9309885	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9811625	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9812010	0.88[EUR][1000 genomes]
rs9812960	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs9814587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs9815442	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9816690	0.88[EUR][1000 genomes]
rs9817048	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9819290	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9820525	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9820687	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9821368	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9821506	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9821800	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9822483	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9831887	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9832377	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9834983	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9836048	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9838997	0.88[EUR][1000 genomes]
rs9840948	0.86[EUR][1000 genomes]
rs9843444	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9845227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs9848134	0.95[EUR][1000 genomes]
rs9849917	0.98[ASN][1000 genomes]
rs9851363	0.95[EUR][1000 genomes]
rs9853043	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9857313	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9857742	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9857763	0.91[ASN][1000 genomes]
rs9859766	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9863450	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9866029	0.84[EUR][1000 genomes]
rs9866312	0.88[EUR][1000 genomes]
rs9866476	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9867563	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes]
rs9868174	0.98[ASN][1000 genomes]
rs9868182	0.93[EUR][1000 genomes]
rs9869419	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9869718	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9872972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs9873073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs9875359	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9876062	0.90[EUR][1000 genomes]
rs9876340	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9878115	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs9878768	0.88[EUR][1000 genomes]
rs9882486	0.88[EUR][1000 genomes]
rs9882687	0.88[EUR][1000 genomes]
rs9883163	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9883264	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1005262	chr3:82165228-82258781	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv877043	chr3:82198467-82311711	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3525899	chr3:82201812-82205110	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3523642	chr3:82202312-82205010	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3523643	chr3:82202312-82205010	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	nsv590778	chr3:82203303-82204602	Enhancers	n/a	n/a	inside rSNPs	n/a
12	nsv590779	chr3:82203354-82223946	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82203400-82204800	Enhancers	HepG2	liver
2	chr3:82204200-82205000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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