Variant report

Variant	rs6548794
Chromosome Location	chr3:82160029-82160030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11127757	0.93[ASN][1000 genomes]
rs11916839	0.96[ASN][1000 genomes]
rs11917041	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11918223	0.93[ASN][1000 genomes]
rs13314987	0.85[ASN][1000 genomes]
rs13321907	0.85[ASN][1000 genomes]
rs13434355	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534668	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17019551	0.84[ASN][1000 genomes]
rs1919559	0.98[ASN][1000 genomes]
rs1919565	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1919566	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141489	0.84[ASN][1000 genomes]
rs2178315	0.84[ASN][1000 genomes]
rs2178316	0.98[ASN][1000 genomes]
rs2316703	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28393435	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28455989	0.82[ASN][1000 genomes]
rs28475537	0.84[ASN][1000 genomes]
rs28536106	0.82[ASN][1000 genomes]
rs28561953	0.84[ASN][1000 genomes]
rs28683026	0.96[ASN][1000 genomes]
rs60509851	0.85[ASN][1000 genomes]
rs60782263	0.84[ASN][1000 genomes]
rs61543943	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61679258	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62265755	0.98[ASN][1000 genomes]
rs62265756	0.85[ASN][1000 genomes]
rs62265757	0.85[ASN][1000 genomes]
rs62268572	0.85[ASN][1000 genomes]
rs6548793	0.98[ASN][1000 genomes]
rs6767358	0.85[ASN][1000 genomes]
rs6769852	0.85[ASN][1000 genomes]
rs6778325	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778814	0.98[ASN][1000 genomes]
rs6781140	0.98[ASN][1000 genomes]
rs6792426	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6793519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804280	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6805116	0.85[ASN][1000 genomes]
rs7611244	0.84[ASN][1000 genomes]
rs7611492	0.84[ASN][1000 genomes]
rs7614689	0.84[ASN][1000 genomes]
rs7619146	0.98[ASN][1000 genomes]
rs7622355	0.85[ASN][1000 genomes]
rs7623648	0.93[ASN][1000 genomes]
rs7635092	0.98[ASN][1000 genomes]
rs7639020	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7639102	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7639908	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9309885	0.82[ASN][1000 genomes]
rs9811625	0.93[ASN][1000 genomes]
rs9815442	0.93[ASN][1000 genomes]
rs9817048	0.93[ASN][1000 genomes]
rs9819290	0.84[ASN][1000 genomes]
rs9820525	1.00[ASN][1000 genomes]
rs9820687	0.98[ASN][1000 genomes]
rs9821368	0.85[ASN][1000 genomes]
rs9821506	0.98[ASN][1000 genomes]
rs9821800	0.84[ASN][1000 genomes]
rs9822483	0.93[ASN][1000 genomes]
rs9831887	0.96[ASN][1000 genomes]
rs9832377	0.85[ASN][1000 genomes]
rs9834983	0.84[ASN][1000 genomes]
rs9836048	0.85[ASN][1000 genomes]
rs9843444	0.84[ASN][1000 genomes]
rs9849917	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853043	0.84[ASN][1000 genomes]
rs9857313	0.98[ASN][1000 genomes]
rs9857742	0.84[ASN][1000 genomes]
rs9857763	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9859766	0.98[ASN][1000 genomes]
rs9863450	0.98[ASN][1000 genomes]
rs9866476	0.93[ASN][1000 genomes]
rs9868174	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869419	0.85[ASN][1000 genomes]
rs9869718	0.85[ASN][1000 genomes]
rs9875359	0.85[ASN][1000 genomes]
rs9876340	0.84[ASN][1000 genomes]
rs9883163	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82159400-82160200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:82159800-82160200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:82160000-82160200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:82160000-82160400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links