Variant report

Variant	rs9857763
Chromosome Location	chr3:82145288-82145289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11127757	0.85[ASN][1000 genomes]
rs11916839	0.89[ASN][1000 genomes]
rs11917041	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11918223	0.85[ASN][1000 genomes]
rs13434355	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1534668	0.92[ASN][1000 genomes]
rs1919559	0.91[ASN][1000 genomes]
rs1919565	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1919566	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2178316	0.91[ASN][1000 genomes]
rs2316703	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28393435	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28683026	0.89[ASN][1000 genomes]
rs61543943	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61679258	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62265755	0.91[ASN][1000 genomes]
rs6548793	0.91[ASN][1000 genomes]
rs6548794	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6776655	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6778325	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6778814	0.91[ASN][1000 genomes]
rs6781140	0.91[ASN][1000 genomes]
rs6792426	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6793519	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6804280	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7619146	0.91[ASN][1000 genomes]
rs7623648	0.85[ASN][1000 genomes]
rs7635092	0.91[ASN][1000 genomes]
rs7639020	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7639102	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7639908	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9811625	0.85[ASN][1000 genomes]
rs9812960	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9814587	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9815442	0.85[ASN][1000 genomes]
rs9817048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9820525	0.92[ASN][1000 genomes]
rs9820687	0.91[ASN][1000 genomes]
rs9821506	0.91[ASN][1000 genomes]
rs9822483	0.85[ASN][1000 genomes]
rs9831887	0.89[ASN][1000 genomes]
rs9845227	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9849917	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9857313	0.91[ASN][1000 genomes]
rs9859766	0.91[ASN][1000 genomes]
rs9863450	0.91[ASN][1000 genomes]
rs9866476	0.85[ASN][1000 genomes]
rs9867563	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs9868174	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9872972	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9873073	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9878115	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9883163	0.91[ASN][1000 genomes]
rs9883264	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82137200-82149000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:82138000-82149400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links