Variant report

Variant	rs28455989
Chromosome Location	chr3:82055193-82055194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11127754	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11127757	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11127758	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11916839	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11917041	0.82[ASN][1000 genomes]
rs11917347	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11918223	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11919912	0.81[EUR][1000 genomes]
rs11922298	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11929553	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12630225	0.82[EUR][1000 genomes]
rs13059531	0.82[EUR][1000 genomes]
rs13088518	0.85[EUR][1000 genomes]
rs13314987	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13321907	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13434355	0.82[ASN][1000 genomes]
rs1534668	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17019551	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1919559	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1919565	0.82[ASN][1000 genomes]
rs1919566	0.82[ASN][1000 genomes]
rs2068210	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2068211	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2141489	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2178316	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2316703	0.97[ASN][1000 genomes]
rs28393435	0.82[ASN][1000 genomes]
rs28475537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28536106	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28561953	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28564625	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28683026	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4521254	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60509851	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60782263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61679258	0.82[ASN][1000 genomes]
rs62265731	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62265755	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62265756	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62265757	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62268572	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6419747	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6548789	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6548790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6548793	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6548794	0.82[ASN][1000 genomes]
rs66870475	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6763269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6767358	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6769852	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6773980	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6774064	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6774157	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6776655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6778325	0.82[ASN][1000 genomes]
rs6778814	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6781140	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6792426	0.82[ASN][1000 genomes]
rs6793519	0.82[ASN][1000 genomes]
rs6805116	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7611244	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7611492	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7612452	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7614689	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7615354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7619146	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7622355	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7623648	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7634781	0.84[EUR][1000 genomes]
rs7635092	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7639020	0.82[ASN][1000 genomes]
rs7639908	0.82[ASN][1000 genomes]
rs9309885	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811625	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9812010	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9812960	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9814587	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9815442	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9816690	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9817048	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9819290	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9820525	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9820687	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9821368	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9821506	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9821800	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9822483	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9831887	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9832377	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9834983	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9836048	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838997	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9840948	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9843444	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9845227	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9848134	0.82[EUR][1000 genomes]
rs9849917	0.82[ASN][1000 genomes]
rs9851363	0.82[EUR][1000 genomes]
rs9853043	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857313	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9857742	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9858684	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9859766	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9863450	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9866029	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9866312	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9866476	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9867563	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9868174	0.82[ASN][1000 genomes]
rs9868182	0.84[EUR][1000 genomes]
rs9869419	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9869718	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9872972	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9873073	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9875359	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9876062	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9876340	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9878115	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9878768	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9882486	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9882687	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9883163	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82053400-82055400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:82053400-82055600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:82054000-82055200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:82054000-82055200	Enhancers	Brain Germinal Matrix	brain
5	chr3:82054600-82055200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:82054600-82055200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:82054800-82055200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:82054800-82055200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:82054800-82055200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:82054800-82055200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:82054800-82055800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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