Variant report

Variant	rs11919912
Chromosome Location	chr3:82208069-82208070
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs11127754	0.84[EUR][1000 genomes]
rs11127757	0.88[EUR][1000 genomes]
rs11127758	0.86[EUR][1000 genomes]
rs11916839	0.88[EUR][1000 genomes]
rs11917347	0.83[EUR][1000 genomes]
rs11918223	0.88[EUR][1000 genomes]
rs11922298	0.86[EUR][1000 genomes]
rs11929553	0.84[EUR][1000 genomes]
rs12630225	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs13059531	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs13088518	0.89[EUR][1000 genomes]
rs13088543	0.82[EUR][1000 genomes]
rs13314987	0.86[EUR][1000 genomes]
rs13321907	0.86[EUR][1000 genomes]
rs1534668	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17019551	0.83[EUR][1000 genomes]
rs1919559	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2068210	0.81[EUR][1000 genomes]
rs2068211	0.84[EUR][1000 genomes]
rs2141489	0.83[EUR][1000 genomes]
rs2178315	0.83[EUR][1000 genomes]
rs2178316	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28455989	0.81[EUR][1000 genomes]
rs28475537	0.83[EUR][1000 genomes]
rs28536106	0.83[EUR][1000 genomes]
rs28561953	0.83[EUR][1000 genomes]
rs28564625	0.83[EUR][1000 genomes]
rs28683026	0.88[EUR][1000 genomes]
rs4283593	0.82[AFR][1000 genomes]
rs4521254	0.86[EUR][1000 genomes]
rs60509851	0.86[EUR][1000 genomes]
rs60782263	0.83[EUR][1000 genomes]
rs62265731	0.83[EUR][1000 genomes]
rs62265755	0.88[EUR][1000 genomes]
rs62265756	0.82[EUR][1000 genomes]
rs62265757	0.83[EUR][1000 genomes]
rs62268572	0.83[EUR][1000 genomes]
rs6419747	0.81[EUR][1000 genomes]
rs6548789	0.81[EUR][1000 genomes]
rs6548790	0.83[EUR][1000 genomes]
rs6548793	0.88[EUR][1000 genomes]
rs66870475	0.83[EUR][1000 genomes]
rs6763269	0.83[EUR][1000 genomes]
rs6767358	0.83[EUR][1000 genomes]
rs6769852	0.86[EUR][1000 genomes]
rs6773980	0.83[EUR][1000 genomes]
rs6774064	0.83[EUR][1000 genomes]
rs6774157	0.83[EUR][1000 genomes]
rs6776655	0.83[EUR][1000 genomes]
rs6778814	0.88[EUR][1000 genomes]
rs6781140	0.88[EUR][1000 genomes]
rs6805116	0.83[EUR][1000 genomes]
rs7611244	0.83[EUR][1000 genomes]
rs7611492	0.83[EUR][1000 genomes]
rs7612452	0.84[EUR][1000 genomes]
rs7614689	0.83[EUR][1000 genomes]
rs7615354	0.81[EUR][1000 genomes]
rs7619146	0.83[EUR][1000 genomes]
rs7622355	0.83[EUR][1000 genomes]
rs7623648	0.88[EUR][1000 genomes]
rs7634781	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7635092	0.88[EUR][1000 genomes]
rs9309885	0.84[EUR][1000 genomes]
rs9811625	0.88[EUR][1000 genomes]
rs9812010	0.83[EUR][1000 genomes]
rs9812960	0.82[EUR][1000 genomes]
rs9814587	0.83[EUR][1000 genomes]
rs9815442	0.88[EUR][1000 genomes]
rs9816690	0.83[EUR][1000 genomes]
rs9817048	0.83[EUR][1000 genomes]
rs9819290	0.83[EUR][1000 genomes]
rs9820525	0.85[EUR][1000 genomes]
rs9820687	0.88[EUR][1000 genomes]
rs9821368	0.83[EUR][1000 genomes]
rs9821506	0.88[EUR][1000 genomes]
rs9821800	0.86[EUR][1000 genomes]
rs9822483	0.88[EUR][1000 genomes]
rs9831887	0.88[EUR][1000 genomes]
rs9832377	0.83[EUR][1000 genomes]
rs9834983	0.86[EUR][1000 genomes]
rs9836048	0.83[EUR][1000 genomes]
rs9838997	0.83[EUR][1000 genomes]
rs9840948	0.81[EUR][1000 genomes]
rs9843444	0.83[EUR][1000 genomes]
rs9845227	0.83[EUR][1000 genomes]
rs9848134	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9851363	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9853043	0.83[EUR][1000 genomes]
rs9857313	0.88[EUR][1000 genomes]
rs9857742	0.83[EUR][1000 genomes]
rs9859766	0.88[EUR][1000 genomes]
rs9863450	0.88[EUR][1000 genomes]
rs9866312	0.83[EUR][1000 genomes]
rs9866476	0.88[EUR][1000 genomes]
rs9867563	0.86[EUR][1000 genomes]
rs9868182	0.93[EUR][1000 genomes]
rs9869419	0.83[EUR][1000 genomes]
rs9869718	0.86[EUR][1000 genomes]
rs9872972	0.86[EUR][1000 genomes]
rs9873073	0.83[EUR][1000 genomes]
rs9875359	0.83[EUR][1000 genomes]
rs9876062	0.86[EUR][1000 genomes]
rs9876340	0.83[EUR][1000 genomes]
rs9878115	0.83[EUR][1000 genomes]
rs9878768	0.83[EUR][1000 genomes]
rs9882486	0.83[EUR][1000 genomes]
rs9882687	0.83[EUR][1000 genomes]
rs9883163	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1005262	chr3:82165228-82258781	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv877043	chr3:82198467-82311711	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv590779	chr3:82203354-82223946	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82205000-82209600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:82207600-82209600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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