Variant report

Variant	rs13088543
Chromosome Location	chr3:82237565-82237566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11127758	0.82[EUR][1000 genomes]
rs11709357	0.93[AMR][1000 genomes]
rs11919912	0.82[EUR][1000 genomes]
rs11922298	0.82[EUR][1000 genomes]
rs12630225	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13059531	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13066341	0.92[AMR][1000 genomes]
rs13088518	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13314987	0.82[EUR][1000 genomes]
rs13321907	0.82[EUR][1000 genomes]
rs1534668	0.82[EUR][1000 genomes]
rs1919559	0.82[EUR][1000 genomes]
rs4521254	0.82[EUR][1000 genomes]
rs60509851	0.82[EUR][1000 genomes]
rs6548803	0.90[AMR][1000 genomes]
rs6769852	0.82[EUR][1000 genomes]
rs7634781	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9814622	0.87[AMR][1000 genomes]
rs9821800	0.82[EUR][1000 genomes]
rs9834983	0.82[EUR][1000 genomes]
rs9848134	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9851363	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9867563	0.82[EUR][1000 genomes]
rs9868182	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9869718	0.82[EUR][1000 genomes]
rs9872972	0.82[EUR][1000 genomes]
rs9876062	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007167	chr3:82050178-82301466	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877041	chr3:82074024-82363196	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008429	chr3:82089650-82510536	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv432460	chr3:82107110-82508010	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1005262	chr3:82165228-82258781	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv877043	chr3:82198467-82311711	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv877044	chr3:82214617-82266033	Enhancers Weak transcription ZNF genes & repeats	lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82233600-82238200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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