Variant report

Variant	rs9811514
Chromosome Location	chr3:17294762-17294763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12330131	1.00[AFR][1000 genomes]
rs12330212	1.00[AFR][1000 genomes]
rs13326791	1.00[AFR][1000 genomes]
rs28360699	1.00[AFR][1000 genomes]
rs28483035	1.00[AFR][1000 genomes]
rs28702567	1.00[AFR][1000 genomes]
rs9823204	1.00[AFR][1000 genomes]
rs9824210	1.00[AFR][1000 genomes]
rs9825456	1.00[AFR][1000 genomes]
rs9828600	1.00[AFR][1000 genomes]
rs9828968	1.00[AFR][1000 genomes]
rs9829692	1.00[AFR][1000 genomes]
rs9846303	1.00[AFR][1000 genomes]
rs9873827	1.00[AFR][1000 genomes]
rs9883914	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876589	chr3:17230884-17346355	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17221600-17295800	Weak transcription	HSMM	muscle
2	chr3:17250000-17330200	Weak transcription	Aorta	Aorta
3	chr3:17255000-17297000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr3:17255200-17363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:17263200-17307200	Weak transcription	Fetal Intestine Small	intestine
6	chr3:17273600-17330200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:17277400-17298800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:17277600-17328600	Weak transcription	Primary T cells from cord blood	blood
9	chr3:17277800-17297800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:17279200-17295600	Weak transcription	Adipose Nuclei	Adipose
11	chr3:17279400-17298200	Weak transcription	Liver	Liver
12	chr3:17279400-17330200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:17279800-17299800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr3:17279800-17329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:17280000-17299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:17280000-17300400	Weak transcription	Dnd41	blood
17	chr3:17280400-17302400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:17285800-17296600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:17290000-17301600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr3:17290200-17301400	Weak transcription	NHDF-Ad	bronchial
21	chr3:17290800-17298800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr3:17291800-17311000	Weak transcription	Primary B cells from cord blood	blood
23	chr3:17293000-17306200	Weak transcription	Right Ventricle	heart
24	chr3:17293200-17296000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links