Variant report

Variant	rs9829692
Chromosome Location	chr3:17245340-17245341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17241712..17244929-chr3:17245188..17248642,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12330131	1.00[AFR][1000 genomes]
rs12330212	1.00[AFR][1000 genomes]
rs28483035	1.00[AFR][1000 genomes]
rs28702567	1.00[AFR][1000 genomes]
rs9811514	1.00[AFR][1000 genomes]
rs9823204	1.00[AFR][1000 genomes]
rs9824210	1.00[AFR][1000 genomes]
rs9825456	1.00[AFR][1000 genomes]
rs9828600	1.00[AFR][1000 genomes]
rs9828968	1.00[AFR][1000 genomes]
rs9846303	1.00[AFR][1000 genomes]
rs9883914	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589841	chr3:17214070-17290465	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876589	chr3:17230884-17346355	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17221600-17295800	Weak transcription	HSMM	muscle
2	chr3:17225600-17256000	Weak transcription	HepG2	liver
3	chr3:17225800-17254800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:17236200-17254600	Weak transcription	A549	lung
5	chr3:17237200-17246800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:17237200-17253800	Weak transcription	HSMMtube	muscle
7	chr3:17237600-17245800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:17237800-17248400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:17237800-17254800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:17238000-17245600	Weak transcription	Right Ventricle	heart
11	chr3:17238000-17256800	Weak transcription	Psoas Muscle	Psoas
12	chr3:17242600-17256400	Weak transcription	Stomach Mucosa	stomach
13	chr3:17242800-17245600	Strong transcription	Fetal Intestine Large	intestine
14	chr3:17242800-17246000	ZNF genes & repeats	GM12878-XiMat	blood
15	chr3:17243000-17245400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:17243000-17245800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr3:17243000-17245800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
18	chr3:17243000-17246000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr3:17243200-17245800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:17243200-17246000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
21	chr3:17243200-17246000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
22	chr3:17243400-17246000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr3:17243400-17246200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:17243800-17246200	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr3:17244000-17246000	ZNF genes & repeats	Dnd41	blood
26	chr3:17244200-17248400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:17244200-17261200	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:17244200-17280600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:17244400-17245400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr3:17244400-17246000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr3:17244400-17246200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr3:17244400-17247200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:17244400-17254000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:17244400-17256800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr3:17244400-17261800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:17244400-17271800	Weak transcription	Spleen	Spleen
37	chr3:17244600-17245600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr3:17244600-17245600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:17244600-17245600	Weak transcription	Ovary	ovary
40	chr3:17244600-17245800	Strong transcription	Lung	lung
41	chr3:17244600-17246600	Weak transcription	Colonic Mucosa	Colon
42	chr3:17244600-17247000	Weak transcription	Left Ventricle	heart
43	chr3:17244600-17247600	Strong transcription	Adipose Nuclei	Adipose
44	chr3:17244600-17248000	Weak transcription	Primary T cells from cord blood	blood
45	chr3:17244600-17248000	Weak transcription	Aorta	Aorta
46	chr3:17244600-17248400	Strong transcription	Primary B cells from cord blood	blood
47	chr3:17244600-17249400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:17244600-17250200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr3:17244600-17253800	Weak transcription	Liver	Liver
50	chr3:17244600-17254200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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