Variant report

Variant	rs9812484
Chromosome Location	chr3:56806145-56806146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10222681	0.86[CEU][hapmap]
rs2171857	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2171858	0.93[CEU][hapmap];0.82[AMR][1000 genomes]
rs6794153	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7627647	0.82[AMR][1000 genomes]
rs9851853	0.86[CEU][hapmap]
rs9882898	0.93[CEU][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:56792600-56809600	Weak transcription	Small Intestine	intestine
3	chr3:56793200-56807200	Weak transcription	HUVEC	blood vessel
4	chr3:56793200-56817400	Weak transcription	Hela-S3	cervix
5	chr3:56793600-56809600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:56796400-56807600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:56796600-56809800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:56796800-56809600	Weak transcription	NHLF	lung
9	chr3:56796800-56816400	Weak transcription	Colonic Mucosa	Colon
10	chr3:56797200-56809200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:56797600-56811400	Weak transcription	Stomach Mucosa	stomach
12	chr3:56799000-56815800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:56800400-56807000	Weak transcription	Fetal Intestine Large	intestine
14	chr3:56800800-56808200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr3:56800800-56809000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr3:56801600-56808200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:56802000-56806400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:56802000-56806600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
19	chr3:56802600-56811800	Strong transcription	Dnd41	blood
20	chr3:56802800-56807400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr3:56802800-56807600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr3:56802800-56808000	Strong transcription	HMEC	breast
23	chr3:56803200-56807400	Strong transcription	Lung	lung
24	chr3:56803200-56808600	Strong transcription	Fetal Stomach	stomach
25	chr3:56803200-56809200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:56803200-56809600	Strong transcription	Thymus	Thymus
27	chr3:56803400-56806400	Strong transcription	NHEK	skin
28	chr3:56803400-56810400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:56803600-56807000	Strong transcription	Placenta Amnion	Placenta Amnion
30	chr3:56803600-56807400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:56803600-56807600	Weak transcription	Ovary	ovary
32	chr3:56803600-56809600	Weak transcription	Fetal Kidney	kidney
33	chr3:56803800-56807400	Weak transcription	Fetal Brain Male	brain
34	chr3:56804000-56807000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr3:56804000-56807000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:56804000-56809000	Weak transcription	Brain Substantia Nigra	brain
37	chr3:56804200-56807200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:56804200-56807400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:56804200-56807600	Strong transcription	Fetal Muscle Trunk	muscle
40	chr3:56804200-56809000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:56804200-56809600	Weak transcription	Brain Angular Gyrus	brain
42	chr3:56804200-56809600	Weak transcription	Right Atrium	heart
43	chr3:56804200-56810000	Strong transcription	Fetal Thymus	thymus
44	chr3:56804200-56810000	Weak transcription	Psoas Muscle	Psoas
45	chr3:56804600-56806600	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr3:56804600-56806800	Strong transcription	HSMM	muscle
47	chr3:56804600-56807400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr3:56804600-56808000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:56804600-56808000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr3:56804600-56808000	Strong transcription	Rectal Mucosa Donor 31	rectum

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