Variant report

Variant	rs9851853
Chromosome Location	chr3:56793997-56793998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56793500..56796272-chr3:56809880..56811540,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10222681	1.00[CEU][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs11130548	0.83[EUR][1000 genomes]
rs2171855	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2171857	0.93[CEU][hapmap]
rs2171858	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2276720	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4619759	0.88[EUR][1000 genomes]
rs4681841	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6794153	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs7627647	0.86[EUR][1000 genomes]
rs9812484	0.86[CEU][hapmap]
rs9825091	0.84[AMR][1000 genomes]
rs9874011	0.92[EUR][1000 genomes]
rs9882898	0.92[CEU][hapmap]

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:56768400-56797600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:56781600-56795200	Weak transcription	Brain Germinal Matrix	brain
4	chr3:56782200-56795200	Weak transcription	Lung	lung
5	chr3:56783400-56802800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:56783600-56802800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:56783800-56802800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:56784600-56796400	Weak transcription	Fetal Brain Female	brain
9	chr3:56788000-56795600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:56789200-56796000	Weak transcription	Placenta	Placenta
11	chr3:56789200-56796400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:56789200-56805800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:56789400-56802800	Weak transcription	Ovary	ovary
14	chr3:56789400-56803200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:56789400-56803200	Weak transcription	Fetal Stomach	stomach
16	chr3:56789600-56794800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr3:56789600-56801200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:56789800-56794800	Enhancers	Primary B cells from peripheral blood	blood
19	chr3:56790000-56795000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:56790000-56796400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:56790000-56796600	Weak transcription	Brain Angular Gyrus	brain
22	chr3:56790200-56804600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:56790400-56803200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr3:56790400-56803200	Weak transcription	Spleen	Spleen
25	chr3:56790600-56796400	Weak transcription	Fetal Heart	heart
26	chr3:56791000-56794000	Genic enhancers	Primary T cells fromperipheralblood	blood
27	chr3:56791000-56796200	Weak transcription	Psoas Muscle	Psoas
28	chr3:56791000-56796200	Weak transcription	Right Atrium	heart
29	chr3:56791000-56796400	Weak transcription	Right Ventricle	heart
30	chr3:56791400-56796000	Weak transcription	Left Ventricle	heart
31	chr3:56792200-56794000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:56792200-56796000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr3:56792600-56794400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr3:56792600-56794800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr3:56792600-56796200	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr3:56792600-56809600	Weak transcription	Small Intestine	intestine
37	chr3:56792800-56794000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:56792800-56795200	Weak transcription	Fetal Muscle Leg	muscle
39	chr3:56792800-56795600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:56792800-56796000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:56792800-56796200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr3:56792800-56796200	Weak transcription	NHLF	lung
43	chr3:56792800-56797200	Weak transcription	Stomach Mucosa	stomach
44	chr3:56792800-56798200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:56792800-56801200	Strong transcription	Dnd41	blood
46	chr3:56792800-56803400	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:56793000-56794000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr3:56793000-56795400	Weak transcription	Colon Smooth Muscle	Colon
49	chr3:56793000-56795600	Weak transcription	HSMMtube	muscle
50	chr3:56793000-56796000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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