Variant report

Variant	rs9874011
Chromosome Location	chr3:56791241-56791242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10222681	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130548	0.83[EUR][1000 genomes]
rs2171855	0.93[EUR][1000 genomes]
rs2171858	0.85[EUR][1000 genomes]
rs2276720	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4619759	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6794153	0.82[EUR][1000 genomes]
rs7627647	0.87[EUR][1000 genomes]
rs9825368	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9851853	0.92[EUR][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56757600-56792200	Weak transcription	Hela-S3	cervix
2	chr3:56758600-56792200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:56763800-56792800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:56764000-56793400	Weak transcription	Gastric	stomach
5	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:56767400-56792600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:56768400-56797600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:56775000-56792600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:56779000-56792600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:56781600-56792200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr3:56781600-56795200	Weak transcription	Brain Germinal Matrix	brain
12	chr3:56782200-56795200	Weak transcription	Lung	lung
13	chr3:56783400-56802800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:56783600-56792600	Weak transcription	A549	lung
15	chr3:56783600-56802800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:56783800-56802800	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:56784400-56792600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:56784600-56796400	Weak transcription	Fetal Brain Female	brain
19	chr3:56785600-56792600	Weak transcription	Fetal Lung	lung
20	chr3:56786000-56792200	Weak transcription	Stomach Mucosa	stomach
21	chr3:56787400-56792600	Weak transcription	Brain Anterior Caudate	brain
22	chr3:56787600-56792600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:56788000-56795600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:56789200-56791400	Enhancers	Left Ventricle	heart
25	chr3:56789200-56792600	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr3:56789200-56796000	Weak transcription	Placenta	Placenta
27	chr3:56789200-56796400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr3:56789200-56805800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:56789400-56792200	Weak transcription	Small Intestine	intestine
30	chr3:56789400-56792200	Weak transcription	HepG2	liver
31	chr3:56789400-56792400	Weak transcription	Esophagus	oesophagus
32	chr3:56789400-56792400	Weak transcription	NHEK	skin
33	chr3:56789400-56792600	Weak transcription	Liver	Liver
34	chr3:56789400-56802800	Weak transcription	Ovary	ovary
35	chr3:56789400-56803200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr3:56789400-56803200	Weak transcription	Fetal Stomach	stomach
37	chr3:56789600-56791400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:56789600-56792600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:56789600-56792600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:56789600-56794800	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr3:56789600-56801200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr3:56789800-56791400	Genic enhancers	Primary T cells from cord blood	blood
43	chr3:56789800-56791600	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr3:56789800-56791600	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr3:56789800-56794800	Enhancers	Primary B cells from peripheral blood	blood
46	chr3:56790000-56792200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr3:56790000-56792400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr3:56790000-56792400	Weak transcription	Fetal Kidney	kidney
49	chr3:56790000-56792600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr3:56790000-56792600	Weak transcription	Brain Substantia Nigra	brain

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