Variant report

Variant	rs2276720
Chromosome Location	chr3:56787692-56787693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56782398..56785543-chr3:56785588..56787979,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10222681	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11130548	0.80[EUR][1000 genomes]
rs2171855	1.00[EUR][1000 genomes]
rs2171858	0.82[EUR][1000 genomes]
rs4619759	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6794153	0.86[EUR][1000 genomes]
rs7627647	0.84[EUR][1000 genomes]
rs9825368	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9851853	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9874011	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56757600-56792200	Weak transcription	Hela-S3	cervix
2	chr3:56758600-56792200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:56759800-56790400	Strong transcription	Dnd41	blood
4	chr3:56760800-56788800	Strong transcription	Fetal Thymus	thymus
5	chr3:56762000-56788400	Weak transcription	Colonic Mucosa	Colon
6	chr3:56763800-56789000	Weak transcription	Small Intestine	intestine
7	chr3:56763800-56790200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:56763800-56792800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:56764000-56788800	Weak transcription	Fetal Heart	heart
10	chr3:56764000-56789000	Weak transcription	Psoas Muscle	Psoas
11	chr3:56764000-56793400	Weak transcription	Gastric	stomach
12	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
13	chr3:56766200-56788200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:56767400-56792600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:56768400-56797600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr3:56775000-56792600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:56775800-56788800	Strong transcription	Thymus	Thymus
18	chr3:56777400-56788400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr3:56779000-56792600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:56779600-56788400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:56779600-56789200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:56779800-56788400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:56779800-56788400	Weak transcription	Ovary	ovary
24	chr3:56779800-56788800	Weak transcription	Esophagus	oesophagus
25	chr3:56779800-56789000	Weak transcription	Right Ventricle	heart
26	chr3:56780000-56787800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr3:56781600-56792200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr3:56781600-56795200	Weak transcription	Brain Germinal Matrix	brain
29	chr3:56782000-56788800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:56782000-56788800	Weak transcription	Spleen	Spleen
31	chr3:56782200-56795200	Weak transcription	Lung	lung
32	chr3:56783200-56788200	Strong transcription	Left Ventricle	heart
33	chr3:56783200-56789000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:56783400-56788400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
35	chr3:56783400-56802800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:56783600-56788400	Weak transcription	Right Atrium	heart
37	chr3:56783600-56788800	Weak transcription	Fetal Stomach	stomach
38	chr3:56783600-56789600	Weak transcription	Brain Substantia Nigra	brain
39	chr3:56783600-56789600	Weak transcription	NHDF-Ad	bronchial
40	chr3:56783600-56792600	Weak transcription	A549	lung
41	chr3:56783600-56802800	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:56783800-56802800	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:56784200-56788200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:56784200-56789200	Weak transcription	Colon Smooth Muscle	Colon
45	chr3:56784400-56788200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr3:56784400-56788800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr3:56784400-56789200	Weak transcription	HSMMtube	muscle
48	chr3:56784400-56789600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:56784400-56789800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:56784400-56792600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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