Variant report

Variant	rs4681841
Chromosome Location	chr3:56795187-56795188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56793500..56796272-chr3:56809880..56811540,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10428123	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs10428221	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs2171855	0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7642971	0.80[EUR][1000 genomes]
rs9825091	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9825368	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs9851853	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9871950	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs9876300	0.82[EUR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:56768400-56797600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:56781600-56795200	Weak transcription	Brain Germinal Matrix	brain
4	chr3:56782200-56795200	Weak transcription	Lung	lung
5	chr3:56783400-56802800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:56783600-56802800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:56783800-56802800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:56784600-56796400	Weak transcription	Fetal Brain Female	brain
9	chr3:56788000-56795600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:56789200-56796000	Weak transcription	Placenta	Placenta
11	chr3:56789200-56796400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:56789200-56805800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:56789400-56802800	Weak transcription	Ovary	ovary
14	chr3:56789400-56803200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:56789400-56803200	Weak transcription	Fetal Stomach	stomach
16	chr3:56789600-56801200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:56790000-56796400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:56790000-56796600	Weak transcription	Brain Angular Gyrus	brain
19	chr3:56790200-56804600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr3:56790400-56803200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:56790400-56803200	Weak transcription	Spleen	Spleen
22	chr3:56790600-56796400	Weak transcription	Fetal Heart	heart
23	chr3:56791000-56796200	Weak transcription	Psoas Muscle	Psoas
24	chr3:56791000-56796200	Weak transcription	Right Atrium	heart
25	chr3:56791000-56796400	Weak transcription	Right Ventricle	heart
26	chr3:56791400-56796000	Weak transcription	Left Ventricle	heart
27	chr3:56792200-56796000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr3:56792600-56796200	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr3:56792600-56809600	Weak transcription	Small Intestine	intestine
30	chr3:56792800-56795200	Weak transcription	Fetal Muscle Leg	muscle
31	chr3:56792800-56795600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:56792800-56796000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:56792800-56796200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:56792800-56796200	Weak transcription	NHLF	lung
35	chr3:56792800-56797200	Weak transcription	Stomach Mucosa	stomach
36	chr3:56792800-56798200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:56792800-56801200	Strong transcription	Dnd41	blood
38	chr3:56792800-56803400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:56793000-56795400	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:56793000-56795600	Weak transcription	HSMMtube	muscle
41	chr3:56793000-56796000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr3:56793000-56796200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr3:56793000-56796200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr3:56793000-56796400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr3:56793000-56796600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:56793000-56796800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:56793000-56798200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr3:56793000-56801000	Weak transcription	NH-A	brain
49	chr3:56793000-56802600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:56793000-56802800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links