Variant report

Variant	rs9871950
Chromosome Location	chr3:56803175-56803176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10428123	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10428221	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11130548	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2171857	0.89[AMR][1000 genomes]
rs2171858	0.87[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4681841	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs6794153	1.00[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7627647	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7642971	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9825091	1.00[CEU][hapmap]
rs9825368	0.81[ASW][hapmap];1.00[CEU][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs9876300	0.96[EUR][1000 genomes]
rs9882898	0.87[MEX][hapmap];0.82[AMR][1000 genomes]
rs9883458	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56764000-56815800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:56789200-56805800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr3:56789400-56803200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr3:56789400-56803200	Weak transcription	Fetal Stomach	stomach
5	chr3:56790200-56804600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:56790400-56803200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:56790400-56803200	Weak transcription	Spleen	Spleen
8	chr3:56792600-56809600	Weak transcription	Small Intestine	intestine
9	chr3:56792800-56803400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:56793000-56803600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:56793000-56804600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:56793200-56803400	Weak transcription	NHEK	skin
13	chr3:56793200-56806000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:56793200-56807200	Weak transcription	HUVEC	blood vessel
15	chr3:56793200-56817400	Weak transcription	Hela-S3	cervix
16	chr3:56793600-56805400	Weak transcription	Esophagus	oesophagus
17	chr3:56793600-56809600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr3:56793800-56803600	Strong transcription	Fetal Thymus	thymus
19	chr3:56793800-56805600	Weak transcription	Primary B cells from cord blood	blood
20	chr3:56796400-56803600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:56796400-56805400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:56796400-56807600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:56796600-56803200	Weak transcription	Lung	lung
24	chr3:56796600-56809800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:56796800-56809600	Weak transcription	NHLF	lung
26	chr3:56796800-56816400	Weak transcription	Colonic Mucosa	Colon
27	chr3:56797000-56803200	Weak transcription	Fetal Brain Female	brain
28	chr3:56797000-56805200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:56797200-56805200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:56797200-56805200	Weak transcription	Placenta	Placenta
31	chr3:56797200-56809200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr3:56797400-56803200	Weak transcription	Right Ventricle	heart
33	chr3:56797400-56805400	Weak transcription	Gastric	stomach
34	chr3:56797600-56811400	Weak transcription	Stomach Mucosa	stomach
35	chr3:56798400-56804400	Genic enhancers	Primary T cells fromperipheralblood	blood
36	chr3:56798400-56804600	Weak transcription	Primary B cells from peripheral blood	blood
37	chr3:56799000-56815800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:56800000-56803200	Weak transcription	Thymus	Thymus
39	chr3:56800200-56803200	Weak transcription	GM12878-XiMat	blood
40	chr3:56800400-56803400	Weak transcription	Brain Germinal Matrix	brain
41	chr3:56800400-56807000	Weak transcription	Fetal Intestine Large	intestine
42	chr3:56800600-56803400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:56800600-56805600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr3:56800800-56803400	Weak transcription	Adipose Nuclei	Adipose
45	chr3:56800800-56804600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:56800800-56808200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:56800800-56809000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr3:56801000-56803200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr3:56801000-56804600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:56801000-56805400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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