Variant report

Variant	rs9883458
Chromosome Location	chr3:56828503-56828504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10428123	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10428221	0.90[EUR][1000 genomes]
rs11130548	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61285684	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6445825	0.99[ASN][1000 genomes]
rs6793417	0.99[ASN][1000 genomes]
rs7642971	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9825368	0.81[EUR][1000 genomes]
rs9871950	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9876300	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56807000-56833200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:56818200-56829400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:56818600-56829000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:56818600-56832000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:56819000-56829000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:56819000-56830400	Weak transcription	HSMM	muscle
7	chr3:56819200-56834400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:56819600-56829000	Weak transcription	Placenta	Placenta
9	chr3:56820400-56829000	Weak transcription	Fetal Kidney	kidney
10	chr3:56820600-56834600	Weak transcription	NHDF-Ad	bronchial
11	chr3:56821000-56830400	Weak transcription	Fetal Brain Female	brain
12	chr3:56821600-56829000	Weak transcription	Small Intestine	intestine
13	chr3:56822400-56829000	Weak transcription	Adipose Nuclei	Adipose
14	chr3:56822400-56833200	Weak transcription	Fetal Stomach	stomach
15	chr3:56822800-56833200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:56823400-56829600	Weak transcription	Fetal Brain Male	brain
17	chr3:56823400-56833200	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:56823600-56829000	Weak transcription	Stomach Mucosa	stomach
19	chr3:56824400-56829200	Weak transcription	Esophagus	oesophagus
20	chr3:56824600-56829000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr3:56824600-56829000	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:56824600-56830200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:56824800-56829000	Weak transcription	Fetal Lung	lung
24	chr3:56824800-56829000	Weak transcription	HMEC	breast
25	chr3:56824800-56829800	Weak transcription	Right Ventricle	heart
26	chr3:56825000-56829000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:56825000-56831800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:56825200-56829200	Weak transcription	Hela-S3	cervix
29	chr3:56825200-56829400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr3:56825200-56832000	Weak transcription	Brain Substantia Nigra	brain
31	chr3:56825400-56829600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr3:56825400-56831800	Weak transcription	NHEK	skin
33	chr3:56825600-56830000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr3:56825600-56830400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr3:56825600-56832400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:56825800-56830400	Weak transcription	Lung	lung
37	chr3:56826400-56833200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr3:56826600-56828600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:56826600-56828800	Weak transcription	Fetal Thymus	thymus
40	chr3:56826600-56829000	Weak transcription	Left Ventricle	heart
41	chr3:56826600-56829000	Weak transcription	Right Atrium	heart
42	chr3:56826600-56829200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr3:56826600-56829200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:56826600-56829400	Weak transcription	Brain Angular Gyrus	brain
45	chr3:56826600-56829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:56826600-56830000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr3:56826600-56830600	Weak transcription	Gastric	stomach
48	chr3:56826600-56830600	Weak transcription	Ovary	ovary
49	chr3:56826600-56831000	Weak transcription	Spleen	Spleen
50	chr3:56826600-56831800	Weak transcription	Psoas Muscle	Psoas

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