Variant report

Variant	rs61285684
Chromosome Location	chr3:56829123-56829124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10428123	0.81[EUR][1000 genomes]
rs11130548	0.82[ASN][1000 genomes]
rs6445825	0.94[ASN][1000 genomes]
rs6793417	0.94[ASN][1000 genomes]
rs7642971	0.81[EUR][1000 genomes]
rs9876300	0.81[EUR][1000 genomes]
rs9883458	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876818	chr3:56805376-56924711	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56807000-56833200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:56818200-56829400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:56818600-56832000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:56819000-56830400	Weak transcription	HSMM	muscle
5	chr3:56819200-56834400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr3:56820600-56834600	Weak transcription	NHDF-Ad	bronchial
7	chr3:56821000-56830400	Weak transcription	Fetal Brain Female	brain
8	chr3:56822400-56833200	Weak transcription	Fetal Stomach	stomach
9	chr3:56822800-56833200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr3:56823400-56829600	Weak transcription	Fetal Brain Male	brain
11	chr3:56823400-56833200	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:56824400-56829200	Weak transcription	Esophagus	oesophagus
13	chr3:56824600-56830200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:56824800-56829800	Weak transcription	Right Ventricle	heart
15	chr3:56825000-56831800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:56825200-56829200	Weak transcription	Hela-S3	cervix
17	chr3:56825200-56829400	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:56825200-56832000	Weak transcription	Brain Substantia Nigra	brain
19	chr3:56825400-56829600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:56825400-56831800	Weak transcription	NHEK	skin
21	chr3:56825600-56830000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:56825600-56830400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr3:56825600-56832400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:56825800-56830400	Weak transcription	Lung	lung
25	chr3:56826400-56833200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr3:56826600-56829200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:56826600-56829200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:56826600-56829400	Weak transcription	Brain Angular Gyrus	brain
29	chr3:56826600-56829600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:56826600-56830000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:56826600-56830600	Weak transcription	Gastric	stomach
32	chr3:56826600-56830600	Weak transcription	Ovary	ovary
33	chr3:56826600-56831000	Weak transcription	Spleen	Spleen
34	chr3:56826600-56831800	Weak transcription	Psoas Muscle	Psoas
35	chr3:56826800-56829200	Weak transcription	Osteobl	bone
36	chr3:56826800-56829800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:56826800-56830000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr3:56826800-56830200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr3:56826800-56830200	Weak transcription	Fetal Heart	heart
40	chr3:56826800-56830800	Weak transcription	Brain Anterior Caudate	brain
41	chr3:56827000-56829200	Weak transcription	Brain Hippocampus Middle	brain
42	chr3:56827400-56834400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr3:56827600-56829200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
44	chr3:56827600-56829400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr3:56827600-56831200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:56827800-56831200	Enhancers	Pancreas	Pancrea
47	chr3:56828000-56829800	Genic enhancers	Primary T cells fromperipheralblood	blood
48	chr3:56828000-56830200	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr3:56828000-56830200	Genic enhancers	Dnd41	blood
50	chr3:56828000-56830600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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