The 2.0 version of rSNPBase

Variant report

Variant rs9876300
Chromosome Location chr3:56816576-56816577
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:56793200-56817400 Weak transcription Hela-S3 cervix
2 chr3:56805800-56816800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
3 chr3:56806400-56816800 Weak transcription Duodenum Mucosa Duodenum
4 chr3:56806400-56817000 Weak transcription NHEK skin
5 chr3:56807000-56833200 Weak transcription Placenta Amnion Placenta Amnion
6 chr3:56807600-56818000 Weak transcription Fetal Muscle Trunk muscle
7 chr3:56807800-56817400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr3:56808200-56816800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr3:56808600-56816800 Enhancers Primary T killer naive cells fromperipheralblood blood
10 chr3:56809000-56816800 Enhancers Primary T killer memory cells from peripheral blood blood
11 chr3:56810000-56816600 Weak transcription Rectal Mucosa Donor 29 rectum
12 chr3:56810000-56822200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr3:56810200-56817000 Enhancers Primary T helper cells fromperipheralblood blood
14 chr3:56810400-56817000 Weak transcription Right Ventricle heart
15 chr3:56810400-56817000 Weak transcription Spleen Spleen
16 chr3:56810400-56818000 Weak transcription Placenta Placenta
17 chr3:56810400-56819000 Weak transcription Fetal Brain Female brain
18 chr3:56811600-56817000 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr3:56812000-56817000 Weak transcription Brain Cingulate Gyrus brain
20 chr3:56812000-56817800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr3:56812400-56818200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr3:56812400-56818600 Weak transcription Brain Angular Gyrus brain
23 chr3:56813600-56816800 Enhancers Primary T helper 17 cells PMA-I stimulated --
24 chr3:56814000-56816800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
25 chr3:56814000-56817600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
26 chr3:56814600-56826800 Enhancers Primary mononuclear cells fromperipheralblood Blood
27 chr3:56814800-56816800 Weak transcription Primary neutrophils fromperipheralblood blood
28 chr3:56814800-56826600 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr3:56815000-56816800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
30 chr3:56815000-56817400 Enhancers Thymus Thymus
31 chr3:56815200-56816800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr3:56815200-56816800 Weak transcription Rectal Smooth Muscle rectum
33 chr3:56815400-56820200 Enhancers Psoas Muscle Psoas
34 chr3:56815600-56817000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr3:56815600-56818200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr3:56815600-56820000 Enhancers Skeletal Muscle Male skeletal muscle
37 chr3:56815600-56820800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
38 chr3:56815600-56823400 Enhancers Primary monocytes fromperipheralblood blood
39 chr3:56815800-56816800 Enhancers GM12878-XiMat blood
40 chr3:56815800-56817000 Enhancers Primary hematopoietic stem cells short term culture blood
41 chr3:56815800-56817200 Enhancers Esophagus oesophagus
42 chr3:56815800-56817200 Enhancers Gastric stomach
43 chr3:56815800-56817400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
44 chr3:56815800-56817400 Genic enhancers Fetal Thymus thymus
45 chr3:56815800-56817400 Enhancers Lung lung
46 chr3:56815800-56817400 Enhancers Pancreas Pancrea
47 chr3:56815800-56817600 Enhancers Sigmoid Colon Sigmoid Colon
48 chr3:56815800-56817600 Enhancers HMEC breast
49 chr3:56815800-56817600 Enhancers HUVEC blood vessel
50 chr3:56815800-56818200 Enhancers Fetal Kidney kidney

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Last update: Aug 31, 2015