Variant report

Variant	rs9815240
Chromosome Location	chr3:145912177-145912178
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1059836	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[ASN][1000 genomes]
rs35978826	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9815240	UBQLN4	cis	parietal	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145880800-145914400	Weak transcription	Left Ventricle	heart
2	chr3:145883000-145913000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:145895800-145918200	Weak transcription	NHDF-Ad	bronchial
4	chr3:145897000-145933600	Weak transcription	Fetal Stomach	stomach
5	chr3:145899600-145917400	Weak transcription	Pancreas	Pancrea
6	chr3:145901000-145923800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:145902800-145912400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:145902800-145923000	Weak transcription	Osteobl	bone
9	chr3:145902800-145923600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:145903000-145934800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:145904800-145912600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr3:145905000-145933600	Weak transcription	NHLF	lung
13	chr3:145906400-145914600	Weak transcription	Fetal Brain Male	brain
14	chr3:145907000-145938600	Weak transcription	Fetal Intestine Small	intestine
15	chr3:145907400-145913000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:145907400-145914400	Weak transcription	Psoas Muscle	Psoas
17	chr3:145907400-145918200	Weak transcription	HepG2	liver
18	chr3:145907600-145913200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:145907600-145915000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:145907600-145939200	Weak transcription	Brain Anterior Caudate	brain
21	chr3:145908200-145936400	Weak transcription	A549	lung
22	chr3:145908400-145917400	Weak transcription	Ovary	ovary
23	chr3:145908600-145914400	Weak transcription	Aorta	Aorta
24	chr3:145909400-145912600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr3:145909600-145939200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:145910400-145932400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:145910400-145940000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:145910600-145913000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:145910800-145913000	Strong transcription	Adipose Nuclei	Adipose
30	chr3:145910800-145913000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr3:145910800-145913200	Strong transcription	Fetal Lung	lung
32	chr3:145910800-145913600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:145910800-145914800	Strong transcription	Liver	Liver
34	chr3:145911200-145914200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:145911400-145916200	Enhancers	HUVEC	blood vessel
36	chr3:145911800-145912600	Enhancers	Fetal Heart	heart
37	chr3:145911800-145913000	Strong transcription	Colon Smooth Muscle	Colon
38	chr3:145911800-145913000	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr3:145912000-145912800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr3:145912000-145914000	Strong transcription	Fetal Intestine Large	intestine
41	chr3:145912000-145915200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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