Variant report

Variant	rs9816148
Chromosome Location	chr3:156835421-156835422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156833386..156836394-chr3:156837520..156841942,4	MCF-7	breast:
2	chr3:156829834..156832541-chr3:156834206..156836747,2	MCF-7	breast:
3	chr3:156811094..156814889-chr3:156831563..156835673,4	K562	blood:
4	chr3:156802474..156811977-chr3:156831792..156841748,16	K562	blood:
5	chr3:156803869..156808712-chr3:156831825..156837265,9	K562	blood:
6	chr3:156835317..156838993-chr3:156875353..156880240,5	K562	blood:
7	chr3:156834875..156837261-chr3:156848856..156851767,2	K562	blood:

Variant related genes	Relation type
ENSG00000243629	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000241135	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs35196422	0.82[ASN][1000 genomes]
rs9289976	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9289977	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9832544	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9870220	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156813200-156838000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:156819600-156846400	Weak transcription	Fetal Kidney	kidney
3	chr3:156829000-156839000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:156829600-156838400	Weak transcription	Spleen	Spleen
5	chr3:156832800-156836400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr3:156833600-156837400	Weak transcription	Pancreas	Pancrea
7	chr3:156833600-156846600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:156833800-156836600	Weak transcription	Fetal Intestine Large	intestine
9	chr3:156833800-156837000	Weak transcription	Fetal Intestine Small	intestine
10	chr3:156833800-156837200	Enhancers	K562	blood
11	chr3:156834000-156836600	Weak transcription	HepG2	liver
12	chr3:156834000-156837200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:156834000-156837400	Weak transcription	Fetal Thymus	thymus
14	chr3:156834200-156837200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:156834200-156837200	Weak transcription	Stomach Mucosa	stomach
16	chr3:156834200-156839400	Weak transcription	HUVEC	blood vessel
17	chr3:156834200-156839600	Weak transcription	NHLF	lung
18	chr3:156834200-156842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:156834200-156842800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:156834200-156844400	Weak transcription	Right Ventricle	heart
21	chr3:156834200-156845400	Weak transcription	Right Atrium	heart
22	chr3:156834400-156838600	Weak transcription	HMEC	breast
23	chr3:156834400-156839200	Weak transcription	HSMM	muscle
24	chr3:156834400-156839400	Weak transcription	Hela-S3	cervix
25	chr3:156834600-156836000	Enhancers	Fetal Heart	heart
26	chr3:156834600-156837400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:156834600-156838000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:156834600-156839800	Weak transcription	Psoas Muscle	Psoas
29	chr3:156834600-156840200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:156834800-156838000	Weak transcription	Left Ventricle	heart
31	chr3:156834800-156838000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr3:156834800-156838400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:156834800-156838600	Weak transcription	NHEK	skin
34	chr3:156834800-156839800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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