Variant report

Variant	rs9870220
Chromosome Location	chr3:156832984-156832985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156811094..156814889-chr3:156831563..156835673,4	K562	blood:
2	chr3:156802474..156811977-chr3:156831792..156841748,16	K562	blood:
3	chr3:156390672..156392500-chr3:156832016..156834589,3	K562	blood:
4	chr3:156803869..156808712-chr3:156831825..156837265,9	K562	blood:
5	chr3:156832411..156834031-chr3:156873705..156875895,2	K562	blood:

Variant related genes	Relation type
ENSG00000241135	Chromatin interaction
ENSG00000163659	Chromatin interaction
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10440022	0.82[JPT][hapmap]
rs12634613	0.85[JPT][hapmap]
rs12696046	0.85[JPT][hapmap]
rs13060940	0.85[JPT][hapmap]
rs13064954	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13091531	0.85[JPT][hapmap]
rs13319063	0.85[JPT][hapmap]
rs13319093	0.82[JPT][hapmap]
rs13321401	0.85[JPT][hapmap]
rs13326278	0.85[JPT][hapmap]
rs13326287	0.85[JPT][hapmap]
rs16827382	0.85[JPT][hapmap]
rs3749215	0.85[JPT][hapmap]
rs6764639	1.00[JPT][hapmap]
rs9289976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9289977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9812766	0.85[JPT][hapmap]
rs9816148	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9821290	0.85[JPT][hapmap]
rs9827476	0.85[JPT][hapmap]
rs9832544	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9866141	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156813200-156838000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:156819600-156846400	Weak transcription	Fetal Kidney	kidney
3	chr3:156827000-156833000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:156827000-156833000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:156827400-156833000	Enhancers	Fetal Heart	heart
6	chr3:156828800-156833000	Weak transcription	NH-A	brain
7	chr3:156829000-156833000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:156829000-156833000	Weak transcription	Right Atrium	heart
9	chr3:156829000-156833200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:156829000-156839000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:156829200-156833400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:156829200-156833800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:156829400-156833600	Weak transcription	Brain Angular Gyrus	brain
14	chr3:156829600-156833200	Weak transcription	Stomach Mucosa	stomach
15	chr3:156829600-156833400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:156829600-156833400	Weak transcription	Fetal Thymus	thymus
17	chr3:156829600-156833600	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:156829600-156833800	Weak transcription	Brain Substantia Nigra	brain
19	chr3:156829600-156838400	Weak transcription	Spleen	Spleen
20	chr3:156829800-156833800	Weak transcription	NHLF	lung
21	chr3:156830400-156834000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:156830800-156833200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:156830800-156833200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:156830800-156833400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:156830800-156833400	Weak transcription	Right Ventricle	heart
26	chr3:156830800-156833800	Weak transcription	Left Ventricle	heart
27	chr3:156831800-156834000	Enhancers	HepG2	liver
28	chr3:156832000-156835400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:156832400-156833000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr3:156832800-156833000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:156832800-156833200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:156832800-156833600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr3:156832800-156833600	Enhancers	Duodenum Mucosa	Duodenum
34	chr3:156832800-156833600	Enhancers	Pancreas	Pancrea
35	chr3:156832800-156833800	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr3:156832800-156833800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr3:156832800-156833800	Enhancers	Fetal Intestine Large	intestine
38	chr3:156832800-156833800	Enhancers	Fetal Intestine Small	intestine
39	chr3:156832800-156833800	Enhancers	Ovary	ovary
40	chr3:156832800-156833800	Flanking Active TSS	K562	blood
41	chr3:156832800-156834200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr3:156832800-156834400	Enhancers	Hela-S3	cervix
43	chr3:156832800-156834400	Enhancers	HMEC	breast
44	chr3:156832800-156834600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:156832800-156834600	Enhancers	Psoas Muscle	Psoas
46	chr3:156832800-156834800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr3:156832800-156834800	Enhancers	Placenta Amnion	Placenta Amnion
48	chr3:156832800-156834800	Enhancers	NHEK	skin
49	chr3:156832800-156836400	Enhancers	Rectal Mucosa Donor 31	rectum

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