Variant report

Variant	rs13326278
Chromosome Location	chr3:156957471-156957472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156956612..156957498-chr3:157211529..157212391,2	MCF-7	breast:
2	chr3:156921859..156922577-chr3:156956944..156957575,2	MCF-7	breast:
3	chr3:156921948..156922690-chr3:156957018..156957556,2	MCF-7	breast:
4	chr3:156919699..156922088-chr3:156955960..156958595,2	K562	blood:
5	chr3:156875663..156878601-chr3:156956786..156959531,4	K562	blood:
6	chr3:156918691..156919685-chr3:156957052..156957552,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LEKR1-4	chr3:156957379-156957588	ENSG00000243176.1
2	lnc-LEKR1-4	chr3:156957379-156957588	ENSG00000243176.1
3	lnc-LEKR1-4	chr3:156957379-156957753	ENSG00000243176.1
4	lnc-LEKR1-4	chr3:156957379-156957588	ENSG00000243176.1
5	lnc-LEKR1-4	chr3:156957379-156957578	NONHSAT092912
6	lnc-LEKR1-4	chr3:156957396-156957588	NONHSAT092913

No data

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10440022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11917697	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634613	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs12696046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13060940	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064954	0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13072252	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13072425	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs13076599	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13078493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13084377	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13090731	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091531	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13093524	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13316165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13319063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13319093	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321401	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13324111	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13325320	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13326287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16827382	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs28447380	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664622	0.89[AFR][1000 genomes]
rs28671546	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28814066	0.85[AFR][1000 genomes]
rs34154019	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34300533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34433563	0.83[EUR][1000 genomes]
rs34508886	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34663304	0.83[EUR][1000 genomes]
rs35196422	0.81[EUR][1000 genomes]
rs35295311	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35988323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749215	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66686295	0.84[EUR][1000 genomes]
rs6764639	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310497	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310500	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71310501	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71310502	0.83[EUR][1000 genomes]
rs71312203	0.83[EUR][1000 genomes]
rs7613866	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814142	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9814609	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817490	0.83[EUR][1000 genomes]
rs9817693	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9821290	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9822583	1.00[YRI][hapmap]
rs9827476	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9829650	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830661	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9856475	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9856588	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9863805	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9866141	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870220	0.85[JPT][hapmap]
rs9872817	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156955200-156966600	Weak transcription	Pancreas	Pancrea
2	chr3:156955600-156959400	Enhancers	Osteobl	bone
3	chr3:156955800-156964800	Weak transcription	Right Atrium	heart
4	chr3:156956800-156957600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:156956800-156959400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr3:156957000-156957600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:156957000-156959000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr3:156957000-156959000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:156957000-156959400	Enhancers	HUVEC	blood vessel
10	chr3:156957200-156957800	Enhancers	Primary B cells from cord blood	blood
11	chr3:156957200-156958400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:156957200-156959400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:156957200-156965200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:156957400-156957600	Enhancers	Lung	lung
15	chr3:156957400-156957800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:156957400-156959000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:156957400-156960400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:156957400-156962600	Weak transcription	NHDF-Ad	bronchial
19	chr3:156957400-156965000	Weak transcription	Primary T cells from cord blood	blood
20	chr3:156957400-156965000	Weak transcription	Fetal Stomach	stomach

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