Variant report

Variant	rs34300533
Chromosome Location	chr3:156944098-156944099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr3:156943948-156944231	GM12878	blood:	n/a	n/a
2	RUNX3	chr3:156943970-156944357	GM12878	blood:	n/a	n/a
3	CEBPB	chr3:156943996-156944356	IMR90	lung:	n/a	chr3:156944166-156944177 chr3:156944166-156944179 chr3:156944166-156944179
4	JUND	chr3:156944068-156944278	HepG2	liver:	n/a	n/a
5	CEBPB	chr3:156944094-156944245	A549	lung:	n/a	chr3:156944166-156944177 chr3:156944166-156944179 chr3:156944166-156944179
6	FOS	chr3:156944023-156944279	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr3:156944032-156944321	Hela-S3	cervix:	n/a	chr3:156944166-156944177 chr3:156944166-156944179 chr3:156944166-156944179
8	FOS	chr3:156944045-156944235	MCF10A-Er-Src	breast:	n/a	n/a
9	E2F4	chr3:156944023-156944211	MCF10A-Er-Src	breast:	n/a	n/a
10	BATF	chr3:156944008-156944231	GM12878	blood:	n/a	n/a
11	FOS	chr3:156944005-156944293	MCF10A-Er-Src	breast:	n/a	n/a
12	FOS	chr3:156943996-156944247	MCF10A-Er-Src	breast:	n/a	n/a
13	CEBPB	chr3:156944043-156944325	K562	blood:	n/a	chr3:156944166-156944177 chr3:156944166-156944179 chr3:156944166-156944179

No.	Distal block	Cell Line	Cell type
1	chr3:156937140..156939016-chr3:156942989..156946437,3	MCF-7	breast:
2	chr3:156943575..156945121-chr3:156948800..156950615,2	K562	blood:
3	chr3:156933862..156936263-chr3:156942374..156944793,2	K562	blood:
4	chr3:156872209..156874500-chr3:156943435..156945429,2	K562	blood:
5	chr3:156901238..156905299-chr3:156943501..156945279,3	K562	blood:

Variant related genes	Relation type
ENSG00000243176	TF binding region
ENSG00000270981	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10440022	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11917697	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634613	0.81[EUR][1000 genomes]
rs12696046	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13060940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064954	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13072252	0.83[EUR][1000 genomes]
rs13072425	0.83[EUR][1000 genomes]
rs13076599	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077564	0.83[EUR][1000 genomes]
rs13078493	0.83[EUR][1000 genomes]
rs13084377	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13090731	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091531	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13093524	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13316165	0.83[EUR][1000 genomes]
rs13319063	0.85[ASN][1000 genomes]
rs13319093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321401	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13324111	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13326278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326287	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16827382	0.81[EUR][1000 genomes]
rs28447380	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664622	0.89[AFR][1000 genomes]
rs28671546	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28814066	0.85[AFR][1000 genomes]
rs34154019	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34433563	0.83[EUR][1000 genomes]
rs34508886	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34663304	0.83[EUR][1000 genomes]
rs35196422	0.81[EUR][1000 genomes]
rs35295311	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35988323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749215	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66686295	0.84[EUR][1000 genomes]
rs6764639	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310497	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310500	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71310501	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71310502	0.83[EUR][1000 genomes]
rs71312203	0.83[EUR][1000 genomes]
rs7613866	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814142	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9814609	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817490	0.83[EUR][1000 genomes]
rs9817693	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9821290	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9827476	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9829650	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830661	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9856475	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9856588	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9863805	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9866141	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872817	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156938200-156948400	Weak transcription	NHDF-Ad	bronchial
2	chr3:156942800-156944600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:156942800-156944600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr3:156943600-156944600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:156943600-156944800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:156943600-156946200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:156943800-156944400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr3:156943800-156944600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:156943800-156944600	Enhancers	Osteobl	bone
10	chr3:156943800-156944800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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