Variant report

Variant	rs12634613
Chromosome Location	chr3:156984216-156984217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156876934..156879709-chr3:156982846..156986882,3	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10440022	1.00[CEU][hapmap];0.84[JPT][hapmap];0.87[EUR][1000 genomes]
rs11917697	0.89[EUR][1000 genomes]
rs12696046	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs13060940	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs13064954	1.00[CEU][hapmap]
rs13072252	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs13072425	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13076599	0.81[EUR][1000 genomes]
rs13077564	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs13078493	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs13083863	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13090731	0.81[EUR][1000 genomes]
rs13091531	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs13093524	0.87[EUR][1000 genomes]
rs13316165	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.87[EUR][1000 genomes]
rs13319063	1.00[CEU][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes]
rs13319093	1.00[CEU][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs13321401	1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs13325320	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs13326278	0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs13326287	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16827382	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28447380	0.89[EUR][1000 genomes]
rs28513929	0.81[EUR][1000 genomes]
rs28671546	0.92[EUR][1000 genomes]
rs34154019	0.81[EUR][1000 genomes]
rs34300533	0.81[EUR][1000 genomes]
rs34433563	0.87[EUR][1000 genomes]
rs34508886	0.87[EUR][1000 genomes]
rs34663304	0.87[EUR][1000 genomes]
rs35043399	0.81[EUR][1000 genomes]
rs35391186	0.81[EUR][1000 genomes]
rs35988323	0.81[EUR][1000 genomes]
rs3749215	0.86[JPT][hapmap];0.92[EUR][1000 genomes]
rs57330741	0.82[EUR][1000 genomes]
rs6764639	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs71310497	0.81[EUR][1000 genomes]
rs71310500	0.87[EUR][1000 genomes]
rs71310501	0.87[EUR][1000 genomes]
rs71310502	0.87[EUR][1000 genomes]
rs71312203	0.87[EUR][1000 genomes]
rs7613866	0.89[EUR][1000 genomes]
rs9812766	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs9814609	0.89[EUR][1000 genomes]
rs9817490	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9821290	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.87[EUR][1000 genomes]
rs9827476	1.00[CEU][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap]
rs9829650	0.81[EUR][1000 genomes]
rs9830661	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs9856588	0.92[EUR][1000 genomes]
rs9866141	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.81[EUR][1000 genomes]
rs9868982	0.81[EUR][1000 genomes]
rs9870220	0.85[JPT][hapmap]
rs9872817	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:156967200-157000000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:156967200-157000000	Weak transcription	NH-A	brain
4	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:156979600-156997000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:156981200-156991400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:156981600-156991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:156982400-156992800	Weak transcription	Osteobl	bone
9	chr3:156982400-156997000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:156983200-156984400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr3:156983200-156984400	Enhancers	Colon Smooth Muscle	Colon
12	chr3:156984200-156984400	Enhancers	Fetal Brain Male	brain
13	chr3:156984200-156986000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:156984200-156998200	Weak transcription	HUVEC	blood vessel

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