Variant report

Variant	rs13316165
Chromosome Location	chr3:157079625-157079626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157073593..157075630-chr3:157078223..157080288,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10440022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12634613	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.87[EUR][1000 genomes]
rs12696046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13060940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs13072252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072425	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076599	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13077564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083863	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13090731	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13091531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13093524	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13319063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13319093	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13321401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13325320	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13325944	0.80[MEX][hapmap]
rs13326278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs13326287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16827382	1.00[CEU][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.87[EUR][1000 genomes]
rs28513929	0.83[EUR][1000 genomes]
rs28671546	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34154019	0.83[EUR][1000 genomes]
rs34300533	0.83[EUR][1000 genomes]
rs34433563	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34508886	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34663304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35043399	0.94[EUR][1000 genomes]
rs35391186	0.94[EUR][1000 genomes]
rs35988323	0.83[EUR][1000 genomes]
rs3749215	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57330741	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6764639	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71310497	0.83[EUR][1000 genomes]
rs71310500	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71310501	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71310502	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71312203	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71312204	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9810648	0.82[ASN][1000 genomes]
rs9812766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9817490	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9827476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs9829650	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9830661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9856588	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9866141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs9868982	0.83[EUR][1000 genomes]
rs9872817	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
2	chr3:157066600-157083200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:157073400-157079800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:157077200-157081000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:157077600-157083400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:157078200-157083400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:157078600-157083800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr3:157078800-157080600	Weak transcription	NHLF	lung
10	chr3:157078800-157083600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:157078800-157091600	Weak transcription	NH-A	brain
12	chr3:157079200-157087600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:157079400-157081400	Weak transcription	HSMM	muscle
14	chr3:157079400-157082800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:157079400-157083000	Weak transcription	A549	lung
16	chr3:157079400-157083200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:157079600-157080200	Weak transcription	HUVEC	blood vessel
18	chr3:157079600-157080600	Weak transcription	Osteobl	bone
19	chr3:157079600-157081000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:157079600-157081000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:157079600-157082200	Weak transcription	NHDF-Ad	bronchial

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