Variant report

Variant	rs57330741
Chromosome Location	chr3:157066327-157066328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156876462..156878944-chr3:157065640..157068147,2	K562	blood:

Variant related genes	Relation type
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10440022	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12634613	0.82[EUR][1000 genomes]
rs12696046	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13072252	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072425	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13076599	0.83[AMR][1000 genomes]
rs13077564	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13078493	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13083863	0.89[EUR][1000 genomes]
rs13090731	0.83[AMR][1000 genomes]
rs13093524	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13316165	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13319063	0.88[ASN][1000 genomes]
rs13321401	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13325320	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13326287	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16827382	0.82[EUR][1000 genomes]
rs28671546	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34433563	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34508886	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34663304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35043399	0.89[EUR][1000 genomes]
rs35391186	0.89[EUR][1000 genomes]
rs35988323	1.00[AFR][1000 genomes]
rs3749215	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71310500	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71310501	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71310502	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71312203	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71312204	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9810648	0.82[ASN][1000 genomes]
rs9817490	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9821290	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9829650	0.83[AMR][1000 genomes]
rs9856588	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9872817	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157056200-157072600	Weak transcription	HUVEC	blood vessel
2	chr3:157057000-157072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:157065600-157066600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:157065600-157066800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:157065600-157066800	Enhancers	NHDF-Ad	bronchial
6	chr3:157065600-157066800	Enhancers	NHLF	lung
7	chr3:157065600-157068400	Enhancers	Osteobl	bone
8	chr3:157065800-157066400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:157065800-157066600	Enhancers	NH-A	brain
10	chr3:157065800-157067000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:157066000-157066400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:157066000-157073200	Weak transcription	HSMM	muscle
13	chr3:157066000-157076400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:157066000-157086800	Weak transcription	Pancreas	Pancrea
15	chr3:157066200-157066800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:157066200-157067600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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