Variant report

Variant	rs13076599
Chromosome Location	chr3:156967427-156967428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10440022	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11917697	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12634613	0.81[EUR][1000 genomes]
rs12696046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13060940	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064954	0.84[EUR][1000 genomes]
rs13072252	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13072425	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13077564	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13078493	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13084377	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13090731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091531	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13093524	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13316165	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13319063	0.85[ASN][1000 genomes]
rs13319093	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321401	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13324111	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13325320	0.80[AMR][1000 genomes]
rs13326278	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326287	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16827382	0.81[EUR][1000 genomes]
rs28447380	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513929	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28664622	0.89[AFR][1000 genomes]
rs28671546	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28814066	0.85[AFR][1000 genomes]
rs34154019	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34300533	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34433563	0.83[EUR][1000 genomes]
rs34508886	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34663304	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35196422	0.81[EUR][1000 genomes]
rs35295311	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35988323	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57330741	0.83[AMR][1000 genomes]
rs66686295	0.84[EUR][1000 genomes]
rs6764639	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310497	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310500	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71310501	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71310502	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71312203	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7613866	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9812766	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814142	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9814609	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9817490	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9817693	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9821290	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9827476	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9829650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830661	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9856475	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9856588	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9863805	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9866141	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868982	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9872817	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156958400-156971200	Weak transcription	Primary B cells from cord blood	blood
2	chr3:156964800-156968600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:156965000-156967600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:156965000-156968600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:156965200-156968200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr3:156965200-156968600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:156965600-156968000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:156965800-156969200	Enhancers	Left Ventricle	heart
9	chr3:156966000-156967600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:156966000-156967600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:156966200-156968000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr3:156966200-156968000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:156966400-156967600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:156966400-156967800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:156966400-156968000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:156966400-156968200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:156966400-156968600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:156966600-156967600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:156966600-156967600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr3:156966600-156967600	Enhancers	Fetal Muscle Leg	muscle
21	chr3:156966600-156967600	Enhancers	Pancreas	Pancrea
22	chr3:156966600-156968000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:156966600-156968000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:156966600-156968000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:156966600-156968000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr3:156966600-156968000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:156966600-156968200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr3:156966600-156968200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr3:156966800-156968000	Enhancers	Right Ventricle	heart
30	chr3:156967000-156967600	Enhancers	Brain Angular Gyrus	brain
31	chr3:156967000-156967600	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr3:156967000-156967600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:156967000-156967600	Enhancers	Hela-S3	cervix
34	chr3:156967000-156967600	Enhancers	HUVEC	blood vessel
35	chr3:156967000-156967800	Enhancers	Brain Hippocampus Middle	brain
36	chr3:156967000-156967800	Enhancers	Brain Substantia Nigra	brain
37	chr3:156967000-156968000	Enhancers	Brain Cingulate Gyrus	brain
38	chr3:156967000-156969000	Weak transcription	Esophagus	oesophagus
39	chr3:156967000-156973400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr3:156967000-156979000	Weak transcription	HSMMtube	muscle
41	chr3:156967200-156967600	Active TSS	Colon Smooth Muscle	Colon
42	chr3:156967200-156967600	Weak transcription	Gastric	stomach
43	chr3:156967200-156969600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr3:156967200-156969600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:156967200-156970000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:156967200-156974600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:156967200-156974600	Weak transcription	Osteobl	bone
48	chr3:156967200-156975000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:156967200-156982000	Weak transcription	Lung	lung
50	chr3:156967200-156989000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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