Variant report

Variant	rs9814609
Chromosome Location	chr3:156956584-156956585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156919699..156922088-chr3:156955960..156958595,2	K562	blood:
2	chr3:156950469..156951990-chr3:156955060..156957422,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10440022	1.00[CEU][hapmap];0.85[ASN][1000 genomes]
rs10513505	0.86[YRI][hapmap]
rs11914788	0.84[YRI][hapmap]
rs11917697	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11917729	0.86[YRI][hapmap]
rs12634613	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12696046	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13060940	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064954	1.00[CEU][hapmap]
rs13072252	1.00[CEU][hapmap]
rs13072425	1.00[CEU][hapmap]
rs13076599	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13077564	1.00[CEU][hapmap]
rs13078493	1.00[CEU][hapmap]
rs13083863	1.00[CEU][hapmap]
rs13084377	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13090731	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091531	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13093524	0.85[ASN][1000 genomes]
rs13316165	1.00[CEU][hapmap]
rs13319063	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13319093	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321401	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs13324111	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13325320	1.00[CEU][hapmap]
rs13326278	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13326287	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16827306	0.86[YRI][hapmap]
rs16827355	0.86[YRI][hapmap]
rs16827378	0.89[YRI][hapmap]
rs16827382	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16827392	0.90[YRI][hapmap]
rs2047646	0.86[YRI][hapmap]
rs2321741	0.86[YRI][hapmap]
rs28447380	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28513929	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28671546	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34154019	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34300533	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35295311	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35988323	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3749215	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6764639	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771465	0.86[YRI][hapmap]
rs71310497	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71310501	0.85[ASN][1000 genomes]
rs7613866	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7625819	0.86[YRI][hapmap]
rs9812766	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9814142	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9817490	1.00[CEU][hapmap]
rs9817693	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9821290	1.00[CEU][hapmap];0.81[ASN][1000 genomes]
rs9827476	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9829650	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9830661	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9856475	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9856588	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9863805	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9866141	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9868982	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156949600-156956800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:156950600-156957000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:156953200-156957200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:156954200-156956800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:156954600-156957400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:156954800-156956600	Enhancers	Rectal Smooth Muscle	rectum
7	chr3:156954800-156957400	Enhancers	Fetal Stomach	stomach
8	chr3:156955000-156957200	Enhancers	Stomach Smooth Muscle	stomach
9	chr3:156955200-156957400	Enhancers	Colon Smooth Muscle	Colon
10	chr3:156955200-156966600	Weak transcription	Pancreas	Pancrea
11	chr3:156955600-156956600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:156955600-156957200	Weak transcription	Primary T cells from cord blood	blood
13	chr3:156955600-156959400	Enhancers	Osteobl	bone
14	chr3:156955800-156964800	Weak transcription	Right Atrium	heart
15	chr3:156956000-156957000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:156956400-156957400	Enhancers	NHDF-Ad	bronchial

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