Variant report

Variant	rs9817693
Chromosome Location	chr3:156860679-156860680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:156860100..156862214-chr3:156863800..156865338,3	MCF-7	breast:
2	chr3:156266499..156269259-chr3:156860290..156863068,2	K562	blood:
3	chr3:156829814..156832338-chr3:156860168..156861958,2	K562	blood:

Variant related genes	Relation type
ENSG00000114850	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10440022	0.90[AMR][1000 genomes]
rs11917697	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12696046	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13060940	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13064954	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13076599	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13084377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13090731	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13091531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13093524	0.90[AMR][1000 genomes]
rs13319093	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13321401	0.93[AMR][1000 genomes]
rs13324111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13326278	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28447380	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28513929	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28671546	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34154019	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34300533	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34508886	0.93[AMR][1000 genomes]
rs35196422	0.86[EUR][1000 genomes]
rs35295311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35988323	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3749215	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66686295	0.89[EUR][1000 genomes]
rs6764639	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71310497	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71310500	0.93[AMR][1000 genomes]
rs71310501	0.93[AMR][1000 genomes]
rs7613866	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9812766	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9814142	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9814609	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9821290	0.93[AMR][1000 genomes]
rs9827476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9829650	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9830661	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9856475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9856588	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9863805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9866141	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9868982	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv520331	chr3:156858300-156915650	Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	139 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156848400-156866000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:156848400-156866000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:156848600-156876600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:156849000-156861000	Weak transcription	Dnd41	blood
5	chr3:156849000-156861800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:156849000-156862400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:156849200-156861600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:156849200-156861600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:156849400-156861600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:156849800-156864000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:156850400-156860800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:156850400-156861600	Weak transcription	Hela-S3	cervix
13	chr3:156851000-156861000	Weak transcription	HUVEC	blood vessel
14	chr3:156852600-156873400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr3:156853200-156865400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr3:156853400-156872000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr3:156854000-156861200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:156855000-156865800	Weak transcription	Aorta	Aorta
19	chr3:156855000-156866000	Weak transcription	Ovary	ovary
20	chr3:156855000-156872000	Weak transcription	Right Atrium	heart
21	chr3:156855200-156861600	Weak transcription	Psoas Muscle	Psoas
22	chr3:156855200-156861800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:156855200-156862000	Weak transcription	Pancreas	Pancrea
24	chr3:156855200-156862200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:156855400-156860800	Weak transcription	GM12878-XiMat	blood
26	chr3:156855400-156862000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:156855400-156862200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:156855400-156862200	Weak transcription	HSMMtube	muscle
29	chr3:156855400-156865400	Weak transcription	Fetal Brain Male	brain
30	chr3:156855400-156865800	Weak transcription	Colonic Mucosa	Colon
31	chr3:156855400-156866000	Weak transcription	Fetal Heart	heart
32	chr3:156855400-156877000	Weak transcription	Gastric	stomach
33	chr3:156855600-156860800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:156855600-156860800	Weak transcription	Brain Germinal Matrix	brain
35	chr3:156855600-156860800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr3:156855600-156861000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:156855600-156861000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr3:156855600-156861000	Weak transcription	Fetal Lung	lung
39	chr3:156855600-156861200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:156855600-156861200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:156855600-156861200	Weak transcription	NHDF-Ad	bronchial
42	chr3:156855600-156861400	Strong transcription	Fetal Thymus	thymus
43	chr3:156855600-156861400	Weak transcription	Osteobl	bone
44	chr3:156855600-156861600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr3:156855600-156861600	Weak transcription	Fetal Kidney	kidney
46	chr3:156855600-156862000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr3:156855600-156862000	Weak transcription	HMEC	breast
48	chr3:156855600-156862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:156855600-156862200	Weak transcription	K562	blood
50	chr3:156855600-156863200	Weak transcription	NH-A	brain

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