Variant report

Variant	rs34433563
Chromosome Location	chr3:157093452-157093453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10440022	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12634613	0.87[EUR][1000 genomes]
rs12696046	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13060940	0.83[EUR][1000 genomes]
rs13072252	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13072425	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13076599	0.83[EUR][1000 genomes]
rs13077564	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13078493	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13083863	0.94[EUR][1000 genomes]
rs13090731	0.83[EUR][1000 genomes]
rs13093524	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13316165	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13319063	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13319093	0.83[EUR][1000 genomes]
rs13321401	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13325320	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13326278	0.83[EUR][1000 genomes]
rs13326287	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16827382	0.87[EUR][1000 genomes]
rs28513929	0.83[EUR][1000 genomes]
rs28671546	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34154019	0.83[EUR][1000 genomes]
rs34300533	0.83[EUR][1000 genomes]
rs34508886	1.00[EUR][1000 genomes]
rs34663304	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35043399	0.94[EUR][1000 genomes]
rs35391186	0.94[EUR][1000 genomes]
rs35988323	0.83[EUR][1000 genomes]
rs3749215	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57330741	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71310497	0.83[EUR][1000 genomes]
rs71310500	0.89[EUR][1000 genomes]
rs71310501	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71310502	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71312203	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71312204	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9812766	0.83[EUR][1000 genomes]
rs9817490	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9821290	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9829650	0.83[EUR][1000 genomes]
rs9856588	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9866141	0.83[EUR][1000 genomes]
rs9868982	0.83[EUR][1000 genomes]
rs9872817	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157078200-157102400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:157081600-157093800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:157083600-157105800	Weak transcription	HSMM	muscle
4	chr3:157083800-157093600	Weak transcription	Fetal Brain Male	brain
5	chr3:157088000-157108600	Weak transcription	Lung	lung
6	chr3:157088200-157093800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:157088600-157105400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:157090200-157096800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:157091200-157095200	Enhancers	NHDF-Ad	bronchial
10	chr3:157091400-157095000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:157091400-157095000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:157091400-157096000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:157091600-157094200	Enhancers	NH-A	brain
14	chr3:157091600-157095000	Enhancers	NHLF	lung
15	chr3:157091600-157097200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:157091800-157108600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:157091800-157142600	Weak transcription	Pancreas	Pancrea
18	chr3:157092000-157096000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:157092600-157093600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:157092600-157093600	Weak transcription	Fetal Lung	lung
21	chr3:157092800-157094200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:157092800-157095000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:157092800-157095000	Enhancers	HUVEC	blood vessel
24	chr3:157093000-157094200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:157093200-157094600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:157093200-157094800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:157093200-157095200	Enhancers	Osteobl	bone
28	chr3:157093400-157094200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links