Variant report

Variant	rs28814066
Chromosome Location	chr3:156963067-156963068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10440022	0.82[AFR][1000 genomes]
rs12696046	0.85[AFR][1000 genomes]
rs13060940	0.85[AFR][1000 genomes]
rs13076599	0.85[AFR][1000 genomes]
rs13090731	0.85[AFR][1000 genomes]
rs13319093	0.85[AFR][1000 genomes]
rs13326278	0.85[AFR][1000 genomes]
rs28513929	0.88[AFR][1000 genomes]
rs28664622	0.96[AFR][1000 genomes]
rs34154019	0.88[AFR][1000 genomes]
rs34300533	0.85[AFR][1000 genomes]
rs3749215	0.85[AFR][1000 genomes]
rs71310497	0.88[AFR][1000 genomes]
rs9812766	0.85[AFR][1000 genomes]
rs9829650	0.85[AFR][1000 genomes]
rs9856588	0.88[AFR][1000 genomes]
rs9866141	0.88[AFR][1000 genomes]
rs9868982	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156955200-156966600	Weak transcription	Pancreas	Pancrea
2	chr3:156955800-156964800	Weak transcription	Right Atrium	heart
3	chr3:156957200-156965200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:156957400-156965000	Weak transcription	Primary T cells from cord blood	blood
5	chr3:156957400-156965000	Weak transcription	Fetal Stomach	stomach
6	chr3:156957600-156964800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:156957600-156966600	Weak transcription	Lung	lung
8	chr3:156958400-156971200	Weak transcription	Primary B cells from cord blood	blood
9	chr3:156959000-156965000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:156959400-156965000	Weak transcription	HUVEC	blood vessel
11	chr3:156962000-156963600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:156962000-156964400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:156962400-156963400	Enhancers	Osteobl	bone
14	chr3:156962600-156963400	Weak transcription	Brain Angular Gyrus	brain
15	chr3:156962600-156963600	Enhancers	NHDF-Ad	bronchial
16	chr3:156963000-156963200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:156963000-156965000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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