Variant report

Variant	rs9822583
Chromosome Location	chr3:156831262-156831263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:156391854..156393729-chr3:156829662..156831580,2	K562	blood:
2	chr3:156829834..156832541-chr3:156834206..156836747,2	MCF-7	breast:
3	chr3:156820330..156823175-chr3:156828764..156831277,2	K562	blood:
4	chr3:156829814..156832338-chr3:156860168..156861958,2	K562	blood:
5	chr3:156826801..156832803-chr3:156862347..156866322,5	K562	blood:
6	chr3:156816659..156819037-chr3:156830373..156832969,2	K562	blood:
7	chr3:156819619..156821242-chr3:156829822..156831787,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction
ENSG00000163659	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12696046	1.00[YRI][hapmap]
rs13060940	1.00[YRI][hapmap]
rs13319093	1.00[YRI][hapmap]
rs13326278	1.00[YRI][hapmap]
rs3749215	1.00[YRI][hapmap]
rs9812766	1.00[YRI][hapmap]
rs9827476	1.00[YRI][hapmap]
rs9830661	1.00[YRI][hapmap]
rs9866141	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349885	chr3:156685409-156878910	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
2	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156810600-156832000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr3:156813200-156838000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:156819600-156846400	Weak transcription	Fetal Kidney	kidney
4	chr3:156822200-156832800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:156823000-156831800	Weak transcription	NHEK	skin
6	chr3:156823600-156832800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:156826800-156832800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:156827000-156833000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:156827000-156833000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:156827400-156833000	Enhancers	Fetal Heart	heart
11	chr3:156827800-156832800	Weak transcription	Fetal Intestine Large	intestine
12	chr3:156828800-156833000	Weak transcription	NH-A	brain
13	chr3:156829000-156831800	Weak transcription	HepG2	liver
14	chr3:156829000-156832800	Weak transcription	Ovary	ovary
15	chr3:156829000-156832800	Weak transcription	Pancreas	Pancrea
16	chr3:156829000-156833000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:156829000-156833000	Weak transcription	Right Atrium	heart
18	chr3:156829000-156833200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:156829000-156839000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:156829200-156832800	Enhancers	K562	blood
21	chr3:156829200-156833400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:156829200-156833800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr3:156829400-156832800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr3:156829400-156833600	Weak transcription	Brain Angular Gyrus	brain
25	chr3:156829600-156833200	Weak transcription	Stomach Mucosa	stomach
26	chr3:156829600-156833400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:156829600-156833400	Weak transcription	Fetal Thymus	thymus
28	chr3:156829600-156833600	Weak transcription	Brain Hippocampus Middle	brain
29	chr3:156829600-156833800	Weak transcription	Brain Substantia Nigra	brain
30	chr3:156829600-156838400	Weak transcription	Spleen	Spleen
31	chr3:156829800-156832200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:156829800-156833800	Weak transcription	NHLF	lung
33	chr3:156830400-156832800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr3:156830400-156834000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr3:156830800-156832800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:156830800-156833200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:156830800-156833200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr3:156830800-156833400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:156830800-156833400	Weak transcription	Right Ventricle	heart
40	chr3:156830800-156833800	Weak transcription	Left Ventricle	heart

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