Variant report

Variant	rs9816648
Chromosome Location	chr3:68620070-68620071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13321458	0.80[EUR][1000 genomes]
rs1398064	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1398065	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1511887	0.82[EUR][1000 genomes]
rs1533154	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1588594	0.87[EUR][1000 genomes]
rs1858373	0.87[CEU][hapmap]
rs2202334	0.84[EUR][1000 genomes]
rs872113	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs9820828	0.86[EUR][1000 genomes]
rs9820953	0.86[EUR][1000 genomes]
rs9825378	0.83[CEU][hapmap]
rs9826377	0.83[EUR][1000 genomes]
rs9860873	0.86[EUR][1000 genomes]
rs9864780	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1828578	chr3:68595321-68641509	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv508223	chr3:68603630-68645355	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv3862	chr3:68608012-68653563	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68620000-68620600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links