Variant report
| Variant | rs9825378 |
|---|---|
| Chromosome Location | chr3:68686991-68686992 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10510971 | 0.87[CHB][hapmap] |
| rs11721243 | 0.84[EUR][1000 genomes] |
| rs13321458 | 0.81[EUR][1000 genomes] |
| rs1394259 | 0.83[ASN][1000 genomes] |
| rs1398063 | 0.83[EUR][1000 genomes] |
| rs1398064 | 0.82[CEU][hapmap] |
| rs1398071 | 0.86[EUR][1000 genomes] |
| rs1858373 | 0.87[CEU][hapmap] |
| rs1910585 | 0.83[EUR][1000 genomes] |
| rs2202334 | 0.80[EUR][1000 genomes] |
| rs2203119 | 0.86[EUR][1000 genomes] |
| rs4270511 | 0.93[CHB][hapmap];0.80[JPT][hapmap] |
| rs4643714 | 0.86[EUR][1000 genomes] |
| rs6762986 | 0.88[ASN][1000 genomes] |
| rs73098738 | 0.84[EUR][1000 genomes] |
| rs73098744 | 0.86[EUR][1000 genomes] |
| rs73098747 | 0.84[EUR][1000 genomes] |
| rs73098748 | 0.84[EUR][1000 genomes] |
| rs874817 | 0.86[EUR][1000 genomes] |
| rs874818 | 0.86[EUR][1000 genomes] |
| rs874819 | 0.86[EUR][1000 genomes] |
| rs874820 | 0.86[EUR][1000 genomes] |
| rs9810990 | 0.86[EUR][1000 genomes] |
| rs9838903 | 0.85[EUR][1000 genomes] |
| rs9857983 | 0.86[EUR][1000 genomes] |
| rs9858470 | 0.86[EUR][1000 genomes] |
| rs9859225 | 0.86[EUR][1000 genomes] |
| rs9859249 | 0.86[EUR][1000 genomes] |
| rs9867536 | 0.86[EUR][1000 genomes] |
| rs9872808 | 0.83[EUR][1000 genomes] |
| rs9875703 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv967018 | chr3:68684918-68687051 | Weak transcription Enhancers | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:68683600-68693400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr3:68686400-68687400 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
