Variant report

Variant	rs1394259
Chromosome Location	chr3:68715718-68715719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:68714555..68717541-chr3:68719964..68722635,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10510971	0.88[CHB][hapmap]
rs4270511	0.86[CHB][hapmap]
rs6762986	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9825378	0.88[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs9837907	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009857	chr3:68696340-68746434	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1007568	chr3:68714009-68747401	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1005544	chr3:68715718-68747401	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68714400-68716200	Enhancers	H9 Cell Line	embryonic stem cell
2	chr3:68714400-68717400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr3:68714600-68716600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:68714600-68716800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:68714800-68716800	Enhancers	Brain Germinal Matrix	brain
6	chr3:68715000-68716000	Weak transcription	Fetal Stomach	stomach
7	chr3:68715000-68716400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:68715000-68716800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:68715200-68716200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:68715200-68716400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:68715400-68715800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:68715400-68715800	Enhancers	Fetal Muscle Leg	muscle
13	chr3:68715400-68715800	Enhancers	Stomach Smooth Muscle	stomach
14	chr3:68715400-68716000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr3:68715400-68716000	Enhancers	NHLF	lung
16	chr3:68715400-68716200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:68715400-68716200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:68715400-68716400	Enhancers	Fetal Heart	heart
19	chr3:68715400-68716400	Enhancers	Placenta	Placenta
20	chr3:68715400-68716800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr3:68715400-68716800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:68715400-68716800	Enhancers	Fetal Brain Male	brain
23	chr3:68715400-68716800	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:68715400-68716800	Enhancers	NHEK	skin
25	chr3:68715400-68717000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:68715400-68717800	Enhancers	Colon Smooth Muscle	Colon
27	chr3:68715600-68715800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:68715600-68716000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:68715600-68716400	Enhancers	Aorta	Aorta

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