Variant report

Variant	rs9816915
Chromosome Location	chr3:43730061-43730062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:43729587-43730154	K562	blood:	n/a	n/a
2	JUND	chr3:43729827-43730125	K562	blood:	n/a	n/a
3	TEAD4	chr3:43729651-43730180	K562	blood:	n/a	n/a
4	TAL1	chr3:43729818-43730103	K562	blood:	n/a	n/a
5	MYC	chr3:43729733-43730134	K562	blood:	n/a	n/a
6	MYC	chr3:43729967-43730187	K562	blood:	n/a	n/a
7	POLR2A	chr3:43729780-43730565	K562	blood:	n/a	n/a
8	USF1	chr3:43729853-43730101	K562	blood:	n/a	n/a
9	MAX	chr3:43729772-43730119	K562	blood:	n/a	n/a
10	MAZ	chr3:43729514-43730125	K562	blood:	n/a	n/a
11	RCOR1	chr3:43729766-43730130	K562	blood:	n/a	n/a
12	BHLHE40	chr3:43728189-43730189	K562	blood:	n/a	n/a
13	EP300	chr3:43729830-43730110	K562	blood:	n/a	n/a
14	TBP	chr3:43729761-43730129	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43677251..43683206-chr3:43726914..43734554,14	K562	blood:
2	chr3:43668066..43670803-chr3:43728566..43730812,2	K562	blood:
3	chr3:43729811..43732596-chr3:43758996..43761442,2	K562	blood:
4	chr3:43662288..43665115-chr3:43729956..43734747,4	MCF-7	breast:
5	chr3:43685158..43687784-chr3:43729150..43731026,2	MCF-7	breast:
6	chr3:43659494..43665311-chr3:43727005..43736111,18	K562	blood:
7	chr3:43716954..43719427-chr3:43728298..43730262,2	MCF-7	breast:
8	chr3:43687935..43690022-chr3:43729079..43730587,2	K562	blood:
9	chr3:43660817..43665304-chr3:43729750..43735886,13	K562	blood:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs72866848	0.81[AFR][1000 genomes]
rs72866873	0.81[AFR][1000 genomes]
rs7647197	1.00[MEX][hapmap]
rs9311342	0.91[AFR][1000 genomes]
rs9816887	1.00[MEX][hapmap]
rs9838138	1.00[MEX][hapmap]
rs9876963	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43727800-43731600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:43728000-43731600	Weak transcription	Pancreas	Pancrea
3	chr3:43728200-43730400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43728200-43731200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:43728200-43731800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:43728400-43730800	Weak transcription	Brain Angular Gyrus	brain
7	chr3:43728600-43731400	Weak transcription	Fetal Stomach	stomach
8	chr3:43728800-43731400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:43728800-43731600	Weak transcription	Psoas Muscle	Psoas
10	chr3:43729000-43731200	Weak transcription	Fetal Brain Male	brain
11	chr3:43729000-43731600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:43729000-43731600	Weak transcription	Left Ventricle	heart
13	chr3:43729200-43731400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:43729200-43731800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:43729600-43730400	Genic enhancers	K562	blood
16	chr3:43729600-43730800	Enhancers	Gastric	stomach
17	chr3:43729600-43731200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:43729800-43730200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr3:43730000-43731600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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