Variant report

Variant	rs72866873
Chromosome Location	chr3:43776187-43776188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:43731645..43733891-chr3:43774294..43776729,2	MCF-7	breast:
2	chr3:43768950..43772362-chr3:43772704..43776401,5	K562	blood:
3	chr3:43768252..43771488-chr3:43772704..43776863,5	K562	blood:
4	chr3:43775591..43778541-chr3:43809723..43813323,3	K562	blood:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction
ENSG00000011198	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12330768	0.82[AFR][1000 genomes]
rs12495394	1.00[AMR][1000 genomes]
rs12497714	1.00[AMR][1000 genomes]
rs4682688	1.00[AMR][1000 genomes]
rs58089657	1.00[AMR][1000 genomes]
rs72866835	1.00[AMR][1000 genomes]
rs72866841	1.00[AMR][1000 genomes]
rs72866848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618790	1.00[AMR][1000 genomes]
rs7620124	1.00[AMR][1000 genomes]
rs7628620	1.00[AMR][1000 genomes]
rs7647197	1.00[AMR][1000 genomes]
rs9311342	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9757381	1.00[AMR][1000 genomes]
rs9816915	0.81[AFR][1000 genomes]
rs9863775	1.00[AMR][1000 genomes]
rs9872346	1.00[AMR][1000 genomes]
rs9876963	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv876733	chr3:43768018-43854669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43755400-43778200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43755600-43776200	Weak transcription	Fetal Brain Female	brain
3	chr3:43755600-43778200	Weak transcription	Brain Germinal Matrix	brain
4	chr3:43755600-43778200	Weak transcription	Fetal Stomach	stomach
5	chr3:43755600-43784000	Weak transcription	Ovary	ovary
6	chr3:43756200-43778400	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:43759600-43778400	Weak transcription	Right Ventricle	heart
8	chr3:43759600-43778600	Weak transcription	Gastric	stomach
9	chr3:43760000-43777800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:43760200-43777200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:43760200-43778800	Weak transcription	Aorta	Aorta
12	chr3:43761000-43777600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:43761200-43776800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:43761600-43784200	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:43762200-43778600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr3:43762400-43777400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:43763200-43777000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:43767600-43778400	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:43768800-43778400	Weak transcription	Dnd41	blood
20	chr3:43769800-43777600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:43770200-43778200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:43770400-43778600	Weak transcription	Psoas Muscle	Psoas
23	chr3:43771000-43778200	Weak transcription	Liver	Liver
24	chr3:43772200-43777800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:43772400-43777800	Weak transcription	Stomach Mucosa	stomach
26	chr3:43772400-43778600	Weak transcription	Colonic Mucosa	Colon
27	chr3:43772400-43778600	Weak transcription	Pancreas	Pancrea
28	chr3:43772800-43777800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr3:43772800-43778400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr3:43773000-43776400	Weak transcription	Fetal Intestine Large	intestine
31	chr3:43774000-43777400	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr3:43774200-43776200	Enhancers	HSMMtube	muscle
33	chr3:43774200-43777200	Strong transcription	K562	blood
34	chr3:43774200-43778800	Enhancers	NHLF	lung
35	chr3:43774400-43776200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr3:43774400-43776200	Enhancers	HSMM	muscle
37	chr3:43774400-43776200	Enhancers	NH-A	brain
38	chr3:43774400-43777000	Enhancers	NHDF-Ad	bronchial
39	chr3:43774400-43777200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:43774400-43778000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:43774600-43776600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr3:43774600-43777000	Enhancers	Osteobl	bone
43	chr3:43774800-43779000	Weak transcription	Thymus	Thymus
44	chr3:43775200-43776200	Strong transcription	Placenta	Placenta
45	chr3:43775200-43777400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:43775400-43776800	Strong transcription	Primary T cells from cord blood	blood
47	chr3:43775400-43777800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:43775600-43776600	Weak transcription	HepG2	liver
49	chr3:43775800-43776200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr3:43775800-43776400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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