Variant report

Variant	rs58089657
Chromosome Location	chr3:43780809-43780810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43731325..43734068-chr3:43780563..43782131,2	K562	blood:
2	chr3:43779474..43781200-chr3:43785664..43787553,2	K562	blood:

Variant related genes	Relation type
ENSG00000011198	Chromatin interaction
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12495394	1.00[AMR][1000 genomes]
rs12497714	1.00[AMR][1000 genomes]
rs4682688	1.00[AMR][1000 genomes]
rs72866835	1.00[AMR][1000 genomes]
rs72866841	1.00[AMR][1000 genomes]
rs72866848	1.00[AMR][1000 genomes]
rs72866873	1.00[AMR][1000 genomes]
rs7618790	1.00[AMR][1000 genomes]
rs7620124	1.00[AMR][1000 genomes]
rs7628620	1.00[AMR][1000 genomes]
rs7647197	1.00[AMR][1000 genomes]
rs9311342	1.00[AMR][1000 genomes]
rs9757381	1.00[AMR][1000 genomes]
rs9863775	1.00[AMR][1000 genomes]
rs9872346	1.00[AMR][1000 genomes]
rs9876963	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv876733	chr3:43768018-43854669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43755600-43784000	Weak transcription	Ovary	ovary
2	chr3:43761600-43784200	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:43775800-43781600	Weak transcription	Lung	lung
4	chr3:43775800-43782600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:43775800-43783600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:43775800-43783800	Weak transcription	Adipose Nuclei	Adipose
7	chr3:43775800-43784000	Weak transcription	Right Atrium	heart
8	chr3:43776000-43784400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:43776000-43789200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:43776200-43781800	Weak transcription	Placenta	Placenta
11	chr3:43778200-43786400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:43778600-43784000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:43778600-43784000	Weak transcription	Right Ventricle	heart
14	chr3:43778800-43783800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:43778800-43784000	Weak transcription	NHLF	lung
16	chr3:43778800-43784200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:43778800-43784200	Weak transcription	Osteobl	bone
18	chr3:43778800-43785800	Weak transcription	Pancreas	Pancrea
19	chr3:43779000-43783800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:43779000-43784000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr3:43779000-43784200	Weak transcription	NHDF-Ad	bronchial
22	chr3:43779400-43784200	Weak transcription	HSMM	muscle
23	chr3:43780000-43784000	Weak transcription	Brain Substantia Nigra	brain
24	chr3:43780000-43784200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:43780000-43784200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:43780200-43783800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:43780200-43783800	Weak transcription	Fetal Intestine Large	intestine
28	chr3:43780200-43783800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr3:43780200-43784200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr3:43780200-43784200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr3:43780600-43783800	Weak transcription	Fetal Intestine Small	intestine
32	chr3:43780800-43783800	Weak transcription	Hela-S3	cervix
33	chr3:43780800-43784000	Weak transcription	Liver	Liver

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