Variant report

Variant	rs9817462
Chromosome Location	chr3:112038399-112038400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13318166	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13321387	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28843681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804712	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6808134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73853397	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73853398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9822925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3949	chr3:111998512-112044060	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112036200-112040400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:112037600-112041600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr3:112038000-112038400	Enhancers	HMEC	breast
4	chr3:112038000-112038800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:112038000-112039000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:112038200-112038400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:112038200-112038400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:112038200-112038400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:112038200-112038800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:112038200-112038800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:112038200-112039000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:112038200-112039000	Enhancers	Thymus	Thymus
13	chr3:112038200-112039000	Enhancers	NHEK	skin
14	chr3:112038200-112039400	Enhancers	Fetal Intestine Small	intestine
15	chr3:112038200-112039600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr3:112038200-112039800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:112038200-112040400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:112038200-112040600	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links